Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq637 89.7 6e-13 seq1304 84.2 3e-11 seq407 84.2 3e-11 seq21322 82.4 9e-11 >seq637 Length=333953 Score = 89.7 bits (98), Expect = 6e-13 Identities = 155/222 (70%), Gaps = 5/222 (2%) Strand=Plus/Plus Query 119517 TCATCCCGAGAGATGAGCTCATTACTGAA-GCAAAGTCCAGGCATGAGTCCTCTTTTCTT 119575 ||||| | | |||||| ||||| ||| | ||| |||||||| || |||| |||||| Sbjct 27918 TCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAG-CCAGGCATCAGCCCTCGTTTCTT 27976 Query 119576 TAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGC 119635 || ||| || |||||| ||| ||| || ||||| ||||||||| |||| || || Sbjct 27977 TAACCAGAAAATGGCAGCAAATGACCCACTGAAAAAGATCCCCTCCACAGAGGCAAATGC 28036 Query 119636 GAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAA---CCACTTGAGAGCCCAGTTGGC 119692 || || || |||||| | || |||||| | ||||||||||||||| | || Sbjct 28037 GATTATTCGTTCAGCATACAGTGCGTCCTTGTCTGATATCCACTTGAGAGCCCACTCTGC 28096 Query 119693 CTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734 ||| | | || || | |||| |||||| | |||||| Sbjct 28097 CTTCTTCCGCACACATGGCAAGGTTTCGATGGCATTGAAAAG 28138 >seq1304 Length=327486 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||| ||||| |||||||||| ||| ||||||||| |||||| Sbjct 4640 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCCAATGTCGCGGGTTCGATCCCCGT 4582 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||| ||||| |||||||||| ||| ||||||||| |||||| Sbjct 9593 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCCAATGTCGCGGGTTCGATCCCCGT 9535 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||| ||||| |||||||||| ||| ||||||||| |||||| Sbjct 13398 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCCAATGTCGCGGGTTCGATCCCCGT 13340 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||| ||||| |||||||||| ||| ||||||||| |||||| Sbjct 16666 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCCAATGTCGCGGGTTCGATCCCCGT 16608 >seq407 Length=1298227 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||| ||||| |||||||||| ||| ||||||||| |||||| Sbjct 1281562 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCCAATGTCGCGGGTTCGATCCCCGT 1281620 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||| ||||| |||||||||| ||| ||||||||| |||||| Sbjct 1284830 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCCAATGTCGCGGGTTCGATCCCCGT 1284888 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||| ||||| |||||||||| ||| ||||||||| |||||| Sbjct 1288635 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCCAATGTCGCGGGTTCGATCCCCGT 1288693 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||| ||||| |||||||||| ||| ||||||||| |||||| Sbjct 1293588 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCCAATGTCGCGGGTTCGATCCCCGT 1293646 >seq21322 Length=935 Score = 82.4 bits (90), Expect = 9e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| ||||| ||||||| || ||| ||||||||| ||||||| Sbjct 403 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAATGTCGCGGGTTCGATCCCCGTT 462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588725618940200