Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1072 100 3e-16 seq1038 100 3e-16 seq203 100 3e-16 >seq1072 Length=3228912 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| | |||||||||| | ||||| || |||| ||| ||||||||||||||||| Sbjct 2900802 CTCATCAGGAGCTGTGTACTCGACGATTTCCGTGCACAGGTTCGAACTCTTAATCGTCCC 2900861 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || ||| | ||| || ||| |||| ||||| || || || |||||||| || || || Sbjct 2900862 CAGATTTTGTTGATTTGATTTTCTGTTACACGCGTCTTTATATAGCATGTACGGTGTGCC 2900921 Query 106612 CGTCTCCGTCTGTGACTTGA 106631 || || |||||| || || Sbjct 2900922 GGTTTCGATCTGTGCCTCGA 2900941 >seq1038 Length=472731 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| | |||||||||| | ||||| || |||| ||| ||||||||||||||||| Sbjct 80325 CTCATCTGGAGCTGTGTACTCAACGATTTCCGTGCACAGGTTCGAACTCTTAATCGTCCC 80384 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 | ||| | ||| || ||| |||| ||||| || || || ||||||||||| || || Sbjct 80385 AAGATTTTGTTGATTTGATTTTCTGTTACACGCGTCTTTATAAAGCATGTAGGGTGTGCC 80444 Query 106612 CGTCTCCGTCTGTGACTTGA 106631 || || |||||| || || Sbjct 80445 GGTTTCGATCTGTGCCTCGA 80464 >seq203 Length=1902415 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| | |||||||||| | ||||| || |||| ||| ||||||||||||||||| Sbjct 1537031 CTCATCTGGAGCTGTGTACTCAACGATTTCCGTGCACAGGTTCGAACTCTTAATCGTCCC 1537090 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 | ||| | ||| || ||| |||| ||||| || || || ||||||||||| || || Sbjct 1537091 AAGATTTTGTTGATTTGATTTTCTGTTACACGCGTCTTTATAAAGCATGTAGGGTGTGCC 1537150 Query 106612 CGTCTCCGTCTGTGACTTGA 106631 || || |||||| || || Sbjct 1537151 GGTTTCGATCTGTGCCTCGA 1537170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589729991787160