Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1607 96.9 8e-15 seq498 91.5 3e-13 seq200 91.5 3e-13 >seq1607 Length=2233834 Score = 96.9 bits (106), Expect = 8e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||||||||||||||| ||||| ||| | || | |||||||| ||||| Sbjct 1467416 GTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTG 1467475 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 || || ||||||||||| ||||| || || ||||| || ||| Sbjct 1467476 TTTTCCAGCGAAGATAAGACGTTGCTGATCGGGAGGGATTCCT 1467518 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||||||||| || || ||||| ||| | || | |||||||| ||||| Sbjct 1461788 GTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTG 1461847 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 || || ||||||||||| ||||| || || ||||| || ||| Sbjct 1461848 TTTTCCAGCGAAGATAAGACGTTGCTGATCGGGAGGGATTCCT 1461890 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||||||||| || || ||||| ||| | || | |||||||| ||||| Sbjct 1463834 GTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTG 1463893 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 ||| || |||||||| || ||||| || || ||||| || ||| Sbjct 1463894 CTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGGGATTCCT 1463936 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||||||||| || || ||||| ||| | || | |||||||| ||||| Sbjct 1468435 GTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTG 1468494 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 || || ||||||||||| ||||| || || ||||| || ||| Sbjct 1468495 TTTTCCAGCGAAGATAAGACGTTGCTGATCCGGAGGGATTCCT 1468537 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 |||||||||||||| || ||| |||||| || || |||| ||| || || || ||| Sbjct 1461660 CCTTCTTTGTCTTGGATCTTTGTCTTGACATTGTCGATGGAGTCAGATGCCTCAACCTCA 1461719 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | |||||||| ||||| ||||| ||||| | ||||||| Sbjct 1461720 AGGGTGATGGTCTTTCCAGTCAAGGTTTTGACGAAGATTTGCATT 1461764 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 |||||||||||||| || ||| |||||| || || |||| ||| || || || ||| Sbjct 1466124 CCTTCTTTGTCTTGGATCTTTGTCTTGACATTGTCGATGGAGTCGGATGCCTCAACCTCA 1466183 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | |||||||| ||||| ||||| ||||| | ||||||| Sbjct 1466184 AGGGTGATGGTCTTTCCAGTCAAGGTTTTGACGAAGATTTGCATT 1466228 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||||||||| || || ||||| ||| | || | |||||||| || || Sbjct 1462804 GTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGTTG 1462863 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTT 195040 || || |||||||| || ||||| || || |||||||| |||| Sbjct 1462864 TTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGGAATTCCTT 1462907 >seq498 Length=2034514 Score = 91.5 bits (100), Expect = 3e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||||||||| || || ||||| ||| | || | |||||||| ||||| Sbjct 1866455 GTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTG 1866396 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 ||||| ||||||||||| ||||| || || ||||| || ||| Sbjct 1866395 TTTACCAGCGAAGATAAGACGTTGCTGATCCGGAGGGATTCCT 1866353 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||||||||| || || ||||| ||| | || | |||||||| ||||| Sbjct 1870191 GTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTG 1870132 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 || || ||||||||||| ||||| || || ||||| || ||| Sbjct 1870131 TTTTCCAGCGAAGATAAGACGTTGCTGATCGGGAGGGATTCCT 1870089 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||||||||| || || ||||| ||| | || | |||||||| ||||| Sbjct 1870680 GTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTG 1870621 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 || || ||||||||||| ||||| || || ||||| || ||| Sbjct 1870620 TTTTCCAGCGAAGATAAGACGTTGCTGATCAGGAGGGATTCCT 1870578 >seq200 Length=1515198 Score = 91.5 bits (100), Expect = 3e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||||||||| || || ||||| ||| | || | |||||||| ||||| Sbjct 878184 GTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTG 878243 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 ||||| ||||||||||| ||||| || || ||||| || ||| Sbjct 878244 TTTACCAGCGAAGATAAGACGTTGCTGATCCGGAGGGATTCCT 878286 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||||||||| || || ||||| ||| | || | |||||||| ||||| Sbjct 873959 GTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTG 874018 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 || || ||||||||||| ||||| || || ||||| || ||| Sbjct 874019 TTTTCCAGCGAAGATAAGACGTTGCTGATCAGGAGGGATTCCT 874061 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||||||||| || || ||||| ||| | || | |||||||| ||||| Sbjct 874448 GTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTG 874507 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 || || ||||||||||| ||||| || || ||||| || ||| Sbjct 874508 TTTTCCAGCGAAGATAAGACGTTGCTGATCGGGAGGGATTCCT 874550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108998154140903