Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1013 134 2e-26 seq1592 129 7e-25 seq637 129 7e-25 seq197 129 7e-25 seq1072 105 8e-18 seq1038 105 8e-18 seq203 105 8e-18 seq2986 82.4 9e-11 seq368 82.4 9e-11 >seq1013 Length=546551 Score = 134 bits (148), Expect = 2e-26 Identities = 659/1024 (64%), Gaps = 40/1024 (4%) Strand=Plus/Plus Query 136649 CCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTAAAAAGTTTCCAAATGGA 136708 || ||| |||| ||| | ||| | || || || ||||| | ||||| | |||| | || Sbjct 159586 CCTATGCTGGCTGAAGCTTGTAAGTCAGTTGAGCAAGCAATGAAAAAATGTCCATACGGC 159645 Query 136709 ATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTCACAAGAATGGAAACCAC 136768 || | | || ||||| ||||| |||||| | || || | |||| ||| ||||| || Sbjct 159646 ATGTACTCTGAGATAAAGTATGATGGAGAAAGAGTGCAATTACACATGAAAGGAAAGGAC 159705 Query 136769 TTTGCATTTTTT-AGTAGAAACATGAAACCCGTAACAAAACATAAAGTTGATTATCTTAA 136827 ||| ||||| | || |||| ||||||| ||| | || || ||| | || || | Sbjct 159706 TTT-CATTTCTACAGCAGAAGTTTGAAACCTGTATCCAATCACAAAATCATGCATTTTGA 159764 Query 136828 TGAGTATATACCTAAAGCCTTTAAAAATGTATCATC-TCTTATTTTAGATTCAGAAATAG 136886 | || || ||| | || ||| | | | ||| | | || | ||| || | Sbjct 159765 AAAATACATCCCTGATGCATTTCCTGAAGGA-CATAGTATGATACTGGATAGCGAGGTTT 159823 Query 136887 TACTAGTAGA--TAAAAATAATAAACCAT-TACCATTTGGCAGTTTGGGTATACATAAAA 136943 | ||||||| | |||| | ||||| | | |||||||| | |||| || ||||||| Sbjct 159824 TGTTAGTAGACGTTAAAACAGGAAACCCTCTTCCATTTGGTACGCTGGGAATCCATAAAA 159883 Query 136944 AGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGATTGTTTGTTTTTTGATG 137003 ||| ||| | ||| || ||||||| ||| |||||||| | | ||| ||| Sbjct 159884 AGACCAAATTCACAGATGCAAATGTATGTTTGTTTATATTTGATATTCTACATTTCAATG 159943 Query 137004 GGTTTGATATGACAGATATTCCTCTAAATGATAGACGATCGATTCTTCAAGAA-ATAATA 137062 | || ||| | | | | || || ||| || ||||| || ||| | || Sbjct 159944 GAGAAAATCTGATGGGAAAGTCGATGAAAGAAAGAAGAACGATT-TTAGAGACCAGTATC 160002 Query 137063 GTAGAAATTCCTAATAGAATAATGTTATCAGAACTATATGTGGTTAAGGAAATTAATCA- 137121 |||||||| ||| | ||||||| ||||| || | | || || || || Sbjct 160003 CATGAAATTCCAAATCGTGTAATGTTGTCAGAGTTAAAATTTGTCAAC------AAGCAG 160056 Query 137122 -ATTATCTAATATACTAGATAATGTA--TTATCACAAAAGT--TAGAAGGATTAGTTGTA 137176 || | || | | ||| || |||||| ||| |||| || | ||| || Sbjct 160057 GATGACCTTAAGCATATGATCGTGCGGGTTATCAAGGAAGGGCTAGAGGGTCTGGTTTTA 160116 Query 137177 AAAGATATCAATAGTAGTTATCTTCCAGGAAAAAGAAAATGGTTAAAGATAAAAAAGGAT 137236 |||||| |||| ||| ||| || |||||||| | ||| | || | |||||||| Sbjct 160117 AAAGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCATTGGCTCAAAGTTAAAAAGGAC 160176 Query 137237 TATTTGAATAATGGCGCTTTAGCTGATTCTATAGACTTAGTAGTATTAGGTGCTTATTAT 137296 || || | | || | |||||| || || ||||| ||| | || ||||||||| Sbjct 160177 TACTTAATGCAAGGTCAAATGGCTGATACTGCTGATTTAGTGGTACTTGGGGCTTATTAT 160236 Query 137297 GGTAAAGG-ATCAAAGGGTGGTATAATGGCTGTATTTTTAATGGGATGT-TATGATGATA 137354 |||| || | |||| ||||| || ||| |||| || ||||||| ||| |||||||||| Sbjct 160237 GGTACCGGTAGCAAA-GGTGGCATGATGTCTGTGTTCCTAATGGG-TGTGTATGATGATA 160294 Query 137355 ATGATTGTAAATGGAAAACTGTTACAAAATGTTCA---GGACATGATGATGAGACGTT-- 137409 | | | || ||| |||||||| || | | |||||||||||||| || || Sbjct 160295 AAGCATCCAAGTGGTGCACTGTTACTAAGGTTGGAAATGGACATGATGATGAAACTTTAG 160354 Query 137410 AAACTATCTACAAACACATCTAAATATGATAAAAATTAATAAAGATCCCaaaaaaaTTCC 137469 ||| || |||| ||| || || ||| | ||||| | || ||| || ||| | || Sbjct 160355 AAAAAATTAACAA--ACAACTGAAAATGGTGAAAATCAGCAAGGATGTAAATAAAGTCCC 160412 Query 137470 -TGATTGGTTAATAGTTAATAAAATATACTAT---CCTGATTTTGTAATAAATGATCCAA 137525 || | ||||| ||| || | | || || || ||||| || | |||||| | Sbjct 160413 AACATGGCTTAAT--TTA--AATAGAAACCATGTCCCAGATTTAGTGGTTGCTGATCCGA 160468 Query 137526 AGGAATCACAGGTATGGGAGATAATAGGATCAGATTTTACATCCTCAAAGTTTCACACAG 137585 || || | || |||||||| | ||| | || || ||| ||| | | |||||| | Sbjct 160469 AGTCCTCGCCTGTTTGGGAGATTACTGGAACCGAGTTCACAAAGTCAGACTCTCACACTG 160528 Query 137586 CTGCTGGAATATCTATTAGATTTCCCAGGTTTTCTAGAATTAGACACGATAAAGATTGGA 137645 | | ||| || || || || ||||| ||| | | | |||| || || || ||||| Sbjct 160529 CGGGTGGGATTTCAATCAGGTTTCCAAGGGTCACAAAAATTCGAAGAGACAAGAATTGGG 160588 Query 137646 AAAC 137649 |||| Sbjct 160589 AAAC 160592 >seq1592 Length=1045015 Score = 129 bits (142), Expect = 7e-25 Identities = 334/498 (67%), Gaps = 17/498 (3%) Strand=Plus/Plus Query 137162 GAAGGATTAGTTGTAAAAGATATCAATAGTAGTTATCTTCCAGGAAAAAGAAAATGGTTA 137221 ||||| | ||| |||||||| |||| ||| ||| || |||||||| | ||| | Sbjct 681962 GAAGGGCTGGTTTTAAAAGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCACTGGCTC 682021 Query 137222 AAGATAAAAAAGGATTATTTGAATAATGGCGCTTTAGCTGATTCTATAGACTTAGTAGTA 137281 || | |||||||| || || | | ||| | |||||| || || ||||| ||| Sbjct 682022 AAAGTTAAAAAGGACTACTTAATGCAAGGCCAAATGGCTGATACTGCTGATTTAGTGGTA 682081 Query 137282 TTAGGTGCTTATTATGGTAAAGG-ATCAAAGGGTGGTATAATGGCTGTATTTTTAATGGG 137340 | || ||||||||||||| || | |||| ||||| || ||| |||| || ||||||| Sbjct 682082 CTTGGGGCTTATTATGGTACCGGTAGCAAA-GGTGGCATGATGTCTGTGTTCCTAATGGG 682140 Query 137341 ATGT-TATGATGATAATGATTGTAAATGGAAAACTGTTACAAAATGTTCA---GGACATG 137396 ||| ||||||||||| | | | | ||| |||||||| || | | ||||||| Sbjct 682141 -TGTGTATGATGATAAGGCATCTCAGTGGTGCACTGTTACTAAGGTTGGAAATGGACATG 682199 Query 137397 ATGATGAGACGTT--AAACTATCTACAAACACATCTAAATATGATAAAAATTAATAAAGA 137454 ||||||| || || ||| || |||| ||| || || ||| | ||||| | || || Sbjct 682200 ATGATGAAACTTTAGAAAAAATTAACAA--ACAACTGAAAATGGTGAAAATCAGCAAGGA 682257 Query 137455 TCCCaaaaaaaTTCCTGATTGGTTAATAGTTAATAAAATATACTAT---CCTGATTTTGT 137511 | || ||| | || ||| ||| | ||| || | | || || || ||||| || Sbjct 682258 TGTAAATAAAGTCCCAACATGGCTAA-ATTTA--AATAGAAACCATGTCCCAGATTTAGT 682314 Query 137512 AATAAATGATCCAAAGGAATCACAGGTATGGGAGATAATAGGATCAGATTTTACATCCTC 137571 | |||||| ||| || | || |||||||| | ||| | || || ||| || Sbjct 682315 GGTGGCTGATCCGAAGTCCTCGCCTGTTTGGGAGATCACTGGAACCGAGTTCACAAAGTC 682374 Query 137572 AAAGTTTCACACAGCTGCTGGAATATCTATTAGATTTCCCAGGTTTTCTAGAATTAGACA 137631 | | | |||||| || | ||| || || || | ||||| ||| || | | |||| || Sbjct 682375 AGACTCTCACACTGCGGGTGGGATTTCAATCCGGTTTCCAAGGGTTACAAAAATTCGAAG 682434 Query 137632 CGATAAAGATTGGAAAAC 137649 || || ||||| |||| Sbjct 682435 AGACAAGAATTGGGAAAC 682452 >seq637 Length=333953 Score = 129 bits (142), Expect = 7e-25 Identities = 165/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | |||||| || || ||||| ||||||||||| |||| ||| | Sbjct 27916 CCTCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAGCCCTCGTTTCT 27975 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 |||||||||| || | ||||||||| ||| || || || || || || | ||||| | Sbjct 27976 TTAACCAGAAAATGGCAGCAAATGACCCACTGAAAAAGATCCCCTCCACAGAGGCAAATG 28035 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA-ATCCATTTCAGTGCCCAATCA 19161 | | || || ||| |||| || || || | ||| ||||| || || ||||| || Sbjct 28036 CGATTATTCGTTCAGCATACAGTGCGTCCTT-GTCTGATATCCACTTGAGAGCCCACTCT 28094 Query 19162 GCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 |||||||| |||||||||| || || || | ||| || ||| Sbjct 28095 GCCTTCTTCCGCACACATGGCAAGGTTTCGATGGCATTGAAAAGA 28139 >seq197 Length=433710 Score = 129 bits (142), Expect = 7e-25 Identities = 334/498 (67%), Gaps = 17/498 (3%) Strand=Plus/Plus Query 137162 GAAGGATTAGTTGTAAAAGATATCAATAGTAGTTATCTTCCAGGAAAAAGAAAATGGTTA 137221 ||||| | ||| |||||||| |||| ||| ||| || |||||||| | ||| | Sbjct 60079 GAAGGGCTGGTTTTAAAAGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCACTGGCTC 60138 Query 137222 AAGATAAAAAAGGATTATTTGAATAATGGCGCTTTAGCTGATTCTATAGACTTAGTAGTA 137281 || | |||||||| || || | | ||| | |||||| || || ||||| ||| Sbjct 60139 AAAGTTAAAAAGGACTACTTAATGCAAGGCCAAATGGCTGATACTGCTGATTTAGTGGTA 60198 Query 137282 TTAGGTGCTTATTATGGTAAAGG-ATCAAAGGGTGGTATAATGGCTGTATTTTTAATGGG 137340 | || ||||||||||||| || | |||| ||||| || ||| |||| || ||||||| Sbjct 60199 CTTGGGGCTTATTATGGTACCGGTAGCAAA-GGTGGCATGATGTCTGTGTTCCTAATGGG 60257 Query 137341 ATGT-TATGATGATAATGATTGTAAATGGAAAACTGTTACAAAATGTTCA---GGACATG 137396 ||| ||||||||||| | | | | ||| |||||||| || | | ||||||| Sbjct 60258 -TGTGTATGATGATAAGGCATCTCAGTGGTGCACTGTTACTAAGGTTGGAAATGGACATG 60316 Query 137397 ATGATGAGACGTT--AAACTATCTACAAACACATCTAAATATGATAAAAATTAATAAAGA 137454 ||||||| || || ||| || |||| ||| || || ||| | ||||| | || || Sbjct 60317 ATGATGAAACTTTAGAAAAAATTAACAA--ACAACTGAAAATGGTGAAAATCAGCAAGGA 60374 Query 137455 TCCCaaaaaaaTTCCTGATTGGTTAATAGTTAATAAAATATACTAT---CCTGATTTTGT 137511 | || ||| | || ||| ||| | ||| || | | || || || ||||| || Sbjct 60375 TGTAAATAAAGTCCCAACATGGCTAA-ATTTA--AATAGAAACCATGTCCCAGATTTAGT 60431 Query 137512 AATAAATGATCCAAAGGAATCACAGGTATGGGAGATAATAGGATCAGATTTTACATCCTC 137571 | |||||| ||| || | || |||||||| | ||| | || || ||| || Sbjct 60432 GGTGGCTGATCCGAAGTCCTCGCCTGTTTGGGAGATCACTGGAACCGAGTTCACAAAGTC 60491 Query 137572 AAAGTTTCACACAGCTGCTGGAATATCTATTAGATTTCCCAGGTTTTCTAGAATTAGACA 137631 | | | |||||| || | ||| || || || | ||||| ||| || | | |||| || Sbjct 60492 AGACTCTCACACTGCGGGTGGGATTTCAATCCGGTTTCCAAGGGTTACAAAAATTCGAAG 60551 Query 137632 CGATAAAGATTGGAAAAC 137649 || || ||||| |||| Sbjct 60552 AGACAAGAATTGGGAAAC 60569 >seq1072 Length=3228912 Score = 105 bits (116), Expect = 8e-18 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 || ||||| |||||||| ||||| | | | |||||||||||||| |||||||| || ||| Sbjct 2898256 TGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATTGAT 2898315 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCAT 47428 || |||||||| | ||||||||||| ||||| || ||||| Sbjct 2898316 TCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCAT 2898356 >seq1038 Length=472731 Score = 105 bits (116), Expect = 8e-18 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 || ||||| |||||||| ||||| | | | |||||||||||||| |||||||| || ||| Sbjct 78628 TGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATTGAT 78687 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCAT 47428 || |||||||| | ||||||||||| ||||| || ||||| Sbjct 78688 TCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCAT 78728 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 48483 CCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCT 48542 || |||||||| || |||| ||||| || ||||| |||| | || |||||||||||| Sbjct 83058 CCAATACCACCAGCAGTTTTGGATATAAGTGCACATTGTTTCAATGTCTCATAAATTCCT 83117 Query 48543 TCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 || ||||| |||||| ||| |||| ||||| ||||| Sbjct 83118 TCAATACTGTCATCTTGCATGGTTAACAGAAAGCAACT 83155 >seq203 Length=1902415 Score = 105 bits (116), Expect = 8e-18 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 || ||||| |||||||| ||||| | | | |||||||||||||| |||||||| || ||| Sbjct 1535334 TGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATTGAT 1535393 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCAT 47428 || |||||||| | ||||||||||| ||||| || ||||| Sbjct 1535394 TCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCAT 1535434 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 48483 CCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCT 48542 || |||||||| || |||| ||||| || ||||| |||| | || |||||||||||| Sbjct 1539764 CCAATACCACCAGCAGTTTTGGATATAAGTGCACATTGTTTCAATGTCTCATAAATTCCT 1539823 Query 48543 TCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 || ||||| |||||| ||| |||| ||||| ||||| Sbjct 1539824 TCAATACTGTCATCTTGCATGGTTAACAGAAAGCAACT 1539861 >seq2986 Length=361983 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521 || || ||||||||||| |||||||| || |||||||| ||||| | ||| |||||| || Sbjct 209695 ACCTCCTCAACTGTCCAGAAAGAAGCTTCAGCTTTTTTGTACATCTGCCAGATATCATGA 209754 Query 19522 TATTGTATAGGAAATATAACAAA 19544 ||||| || || || || ||||| Sbjct 209755 TATTGAATGGGGAAGATGACAAA 209777 >seq368 Length=471785 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521 || || ||||||||||| |||||||| || |||||||| ||||| | ||| |||||| || Sbjct 209502 ACCTCCTCAACTGTCCAGAAAGAAGCTTCAGCTTTTTTGTACATCTGCCAGATATCATGA 209561 Query 19522 TATTGTATAGGAAATATAACAAA 19544 ||||| || || || || ||||| Sbjct 209562 TATTGAATGGGGAAGATGACAAA 209584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561869840522760