Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1592 154 2e-32 seq1013 154 2e-32 seq197 154 2e-32 seq1412 93.3 5e-14 seq1343 93.3 5e-14 seq170 93.3 5e-14 >seq1592 Length=1045015 Score = 154 bits (170), Expect = 2e-32 Identities = 354/521 (68%), Gaps = 14/521 (3%) Strand=Plus/Plus Query 142370 TTATTAAATAAAGGTTTAGAAGGAGCTA-TTTTAAAATATCCAAATGATATGTATATACC 142428 |||||||| || | || ||||| ||| |||||||| || || | ||| ||| ||| Sbjct 681945 TTATTAAAGAAGGACTT-GAAGG-GCTGGTTTTAAAAGATGTCAAAGGTATCTATGAACC 682002 Query 142429 AGGTAAAAGAAAATGGAT-AAAGATAAAAAGGGATTACTTAAACGATGGTGCAATGGCAG 142487 || ||||| | ||| | |||| |||||||| | ||||||| | || |||||| | Sbjct 682003 GGGAAAAAGGCACTGGCTCAAAGTTAAAAAGG-ACTACTTAATGCAAGGCCAAATGGCTG 682061 Query 142488 ATTCAGCAGATTTAGTCGTATTGGGTGCATATTATGGTAAAGGTAAAAGATATGGAGGGA 142547 || | || |||||||| ||| | || || |||||||||| |||| | | || || | Sbjct 682062 ATACTGCTGATTTAGTGGTACTTGGGGCTTATTATGGTACCGGTAGCAAA---GGTGGCA 682118 Query 142548 TAATGTCTATATTTCTTATGGGTTGTTATGATGAAGATACAAATACATGGAAAACTGTTA 142607 | |||||| | || || |||||| |||||||| | || | ||| ||||||| Sbjct 682119 TGATGTCTGTGTTCCTAATGGGTGTGTATGATGATAAGGCATCTCAGTGGTGCACTGTTA 682178 Query 142608 CAAAATGTTCA---GGATTCAATGATGAAACATTA-AAGGAATTA-CAGTCAATTGATA- 142661 | || | | ||| |||||||||| ||| || ||||| || ||| ||| | Sbjct 682179 CTAAGGTTGGAAATGGACATGATGATGAAACTTTAGAAAAAATTAACAAACAACTGAAAA 682238 Query 142662 TGATAAAAATCAGTAAAAATAAAGATAAAATACCAACATGGTTAAATATTAACAGTATAC 142721 || | |||||||| || || | ||||| | ||||||||| ||||| | || || | | Sbjct 682239 TGGTGAAAATCAGCAAGGATGTAAATAAAGTCCCAACATGGCTAAATTTAAATAGAAACC 682298 Query 142722 ATTATCCAGATTTTATTGTTAATAATCCAAAAACATCACCTGTTTGGGAAATATCCGGAT 142781 || |||||||| | || | |||| || | || ||||||||||| || | ||| Sbjct 682299 ATGTCCCAGATTTAGTGGTGGCTGATCCGAAGTCCTCGCCTGTTTGGGAGATCACTGGAA 682358 Query 142782 ATGAATTTACAAAATCACCATCTCATACAGCAGATGGGATATCTATTAGATTTCCTAGAT 142841 || || ||||| ||| ||||| || || | |||||| || || | ||||| || Sbjct 682359 CCGAGTTCACAAAGTCAGACTCTCACACTGCGGGTGGGATTTCAATCCGGTTTCCAAGGG 682418 Query 142842 GTAAAAATATAAGAAATGATAAAGATTGGTTATCTGCAACA 142882 || ||| || ||| || || ||||| | |||| ||| Sbjct 682419 TTACAAAAATTCGAAGAGACAAGAATTGGGAAACTGCCACA 682459 >seq1013 Length=546551 Score = 154 bits (170), Expect = 2e-32 Identities = 334/492 (68%), Gaps = 11/492 (2%) Strand=Plus/Plus Query 142398 TTTTAAAATATCCAAATGATATGTATATACCAGGTAAAAGAAAATGGAT-AAAGATAAAA 142456 |||||||| || || | ||| ||| ||| || ||||| | ||| | |||| ||||| Sbjct 160112 TTTTAAAAGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCATTGGCTCAAAGTTAAAA 160171 Query 142457 AGGGATTACTTAAACGATGGTGCAATGGCAGATTCAGCAGATTTAGTCGTATTGGGTGCA 142516 ||| | ||||||| | ||| |||||| ||| | || |||||||| ||| | || || Sbjct 160172 AGG-ACTACTTAATGCAAGGTCAAATGGCTGATACTGCTGATTTAGTGGTACTTGGGGCT 160230 Query 142517 TATTATGGTAAAGGTAAAAGATATGGAGGGATAATGTCTATATTTCTTATGGGTTGTTAT 142576 |||||||||| |||| | | || || || |||||| | || || |||||| ||| Sbjct 160231 TATTATGGTACCGGTAGCAAA---GGTGGCATGATGTCTGTGTTCCTAATGGGTGTGTAT 160287 Query 142577 GATGAAGATACAAATACATGGAAAACTGTTACAAAATGTTCA---GGATTCAATGATGAA 142633 ||||| | || | ||| |||||||| || | | ||| |||||||| Sbjct 160288 GATGATAAAGCATCCAAGTGGTGCACTGTTACTAAGGTTGGAAATGGACATGATGATGAA 160347 Query 142634 ACATTA-AAGGAATTA-CAGTCAATTGATA-TGATAAAAATCAGTAAAAATAAAGATAAA 142690 || ||| || ||||| || ||| ||| | || | |||||||| || || | ||||| Sbjct 160348 ACTTTAGAAAAAATTAACAAACAACTGAAAATGGTGAAAATCAGCAAGGATGTAAATAAA 160407 Query 142691 ATACCAACATGGTTAAATATTAACAGTATACATTATCCAGATTTTATTGTTAATAATCCA 142750 | ||||||||| | ||| | || || | ||| |||||||| | ||| | |||| Sbjct 160408 GTCCCAACATGGCTTAATTTAAATAGAAACCATGTCCCAGATTTAGTGGTTGCTGATCCG 160467 Query 142751 AAAACATCACCTGTTTGGGAAATATCCGGATATGAATTTACAAAATCACCATCTCATACA 142810 || | || ||||||||||| || | ||| || || ||||| ||| ||||| || Sbjct 160468 AAGTCCTCGCCTGTTTGGGAGATTACTGGAACCGAGTTCACAAAGTCAGACTCTCACACT 160527 Query 142811 GCAGATGGGATATCTATTAGATTTCCTAGATGTAAAAATATAAGAAATGATAAAGATTGG 142870 || | |||||| || || || ||||| || | ||| || ||| || || ||||| Sbjct 160528 GCGGGTGGGATTTCAATCAGGTTTCCAAGGGTCACAAAAATTCGAAGAGACAAGAATTGG 160587 Query 142871 TTATCTGCAACA 142882 | |||| ||| Sbjct 160588 GAAACTGCCACA 160599 >seq197 Length=433710 Score = 154 bits (170), Expect = 2e-32 Identities = 354/521 (68%), Gaps = 14/521 (3%) Strand=Plus/Plus Query 142370 TTATTAAATAAAGGTTTAGAAGGAGCTA-TTTTAAAATATCCAAATGATATGTATATACC 142428 |||||||| || | || ||||| ||| |||||||| || || | ||| ||| ||| Sbjct 60062 TTATTAAAGAAGGACTT-GAAGG-GCTGGTTTTAAAAGATGTCAAAGGTATCTATGAACC 60119 Query 142429 AGGTAAAAGAAAATGGAT-AAAGATAAAAAGGGATTACTTAAACGATGGTGCAATGGCAG 142487 || ||||| | ||| | |||| |||||||| | ||||||| | || |||||| | Sbjct 60120 GGGAAAAAGGCACTGGCTCAAAGTTAAAAAGG-ACTACTTAATGCAAGGCCAAATGGCTG 60178 Query 142488 ATTCAGCAGATTTAGTCGTATTGGGTGCATATTATGGTAAAGGTAAAAGATATGGAGGGA 142547 || | || |||||||| ||| | || || |||||||||| |||| | | || || | Sbjct 60179 ATACTGCTGATTTAGTGGTACTTGGGGCTTATTATGGTACCGGTAGCAAA---GGTGGCA 60235 Query 142548 TAATGTCTATATTTCTTATGGGTTGTTATGATGAAGATACAAATACATGGAAAACTGTTA 142607 | |||||| | || || |||||| |||||||| | || | ||| ||||||| Sbjct 60236 TGATGTCTGTGTTCCTAATGGGTGTGTATGATGATAAGGCATCTCAGTGGTGCACTGTTA 60295 Query 142608 CAAAATGTTCA---GGATTCAATGATGAAACATTA-AAGGAATTA-CAGTCAATTGATA- 142661 | || | | ||| |||||||||| ||| || ||||| || ||| ||| | Sbjct 60296 CTAAGGTTGGAAATGGACATGATGATGAAACTTTAGAAAAAATTAACAAACAACTGAAAA 60355 Query 142662 TGATAAAAATCAGTAAAAATAAAGATAAAATACCAACATGGTTAAATATTAACAGTATAC 142721 || | |||||||| || || | ||||| | ||||||||| ||||| | || || | | Sbjct 60356 TGGTGAAAATCAGCAAGGATGTAAATAAAGTCCCAACATGGCTAAATTTAAATAGAAACC 60415 Query 142722 ATTATCCAGATTTTATTGTTAATAATCCAAAAACATCACCTGTTTGGGAAATATCCGGAT 142781 || |||||||| | || | |||| || | || ||||||||||| || | ||| Sbjct 60416 ATGTCCCAGATTTAGTGGTGGCTGATCCGAAGTCCTCGCCTGTTTGGGAGATCACTGGAA 60475 Query 142782 ATGAATTTACAAAATCACCATCTCATACAGCAGATGGGATATCTATTAGATTTCCTAGAT 142841 || || ||||| ||| ||||| || || | |||||| || || | ||||| || Sbjct 60476 CCGAGTTCACAAAGTCAGACTCTCACACTGCGGGTGGGATTTCAATCCGGTTTCCAAGGG 60535 Query 142842 GTAAAAATATAAGAAATGATAAAGATTGGTTATCTGCAACA 142882 || ||| || ||| || || ||||| | |||| ||| Sbjct 60536 TTACAAAAATTCGAAGAGACAAGAATTGGGAAACTGCCACA 60576 >seq1412 Length=884851 Score = 93.3 bits (102), Expect = 5e-14 Identities = 173/254 (68%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 78246 GATGAAGGTCAATTTTTTAATGATATAGTGGAATTTTCTGAAAATATGGCAAATAAAGGA 78305 |||||||| ||||||||| |||||| || | |||| ||| | ||| || ||| Sbjct 29349 GATGAAGGGCAATTTTTTCCTGATATTGTTCAGTTTTGTGACGAAATGTCATCACTTGGA 29408 Query 78306 AAAATTGTTATTGTTTCGGCATTAGATGCTACATATCAAAGAAAAACATTTGGTAATATT 78365 || | ||||||||| | || || |||| ||| | | || ||||| | || || | | Sbjct 29409 AAGACTGTTATTGTGGCAGCTTTGGATGGTACCTTTGAACGAAAACCCTTCGGCTCTGTG 29468 Query 78366 CTAAATTTAATTCCATTATCTGAAAAGGTAATAAAATTAAATGCTATATGTAAAATATGT 78425 || ||||||| ||| || |||| | || | ||| ||| ||| | |||| | || Sbjct 29469 CTCGATTTAATCCCAATAGCTGAGACTGTGGTCAAACTAAGTGCAGTTTGTACATCTTGC 29528 Query 78426 TTTAATGATGCTGCATTTACAAAAAGATTATGTGACGATACTAAAATTGAACTAATTGGT 78485 |||| || || || ||||||||||| | | ||| ||| | | ||| | |||||| Sbjct 29529 TTTAGAGAAGCAGCTTTTACAAAAAGGCTGGGATCCGAAACTGCAGTGGAAGTTATTGGT 29588 Query 78486 GGAGAGGATAAATA 78499 || | |||||||| Sbjct 29589 GGGGCTGATAAATA 29602 Score = 93.3 bits (102), Expect = 5e-14 Identities = 173/254 (68%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 78246 GATGAAGGTCAATTTTTTAATGATATAGTGGAATTTTCTGAAAATATGGCAAATAAAGGA 78305 |||||||| ||||||||| |||||| || | |||| ||| | ||| || ||| Sbjct 46460 GATGAAGGGCAATTTTTTCCTGATATTGTTCAGTTTTGTGACGAAATGTCATCACTAGGG 46519 Query 78306 AAAATTGTTATTGTTTCGGCATTAGATGCTACATATCAAAGAAAAACATTTGGTAATATT 78365 || | ||||||||| | || || |||| ||| | | || ||||| | || || | | Sbjct 46520 AAGACTGTTATTGTGGCAGCTTTGGATGGTACCTTTGAACGAAAACCCTTCGGCTCTGTG 46579 Query 78366 CTAAATTTAATTCCATTATCTGAAAAGGTAATAAAATTAAATGCTATATGTAAAATATGT 78425 || ||||||| ||| || |||| | || | ||| ||| ||| | |||| | || Sbjct 46580 CTCGATTTAATCCCAATAGCTGAGACTGTGGTCAAACTAAGTGCAGTTTGTACATCTTGC 46639 Query 78426 TTTAATGATGCTGCATTTACAAAAAGATTATGTGACGATACTAAAATTGAACTAATTGGT 78485 |||| || || || ||||||||||| | | ||| ||| | | ||| | |||||| Sbjct 46640 TTTAGAGAAGCAGCTTTTACAAAAAGGCTGGGGTCCGAAACTGCAGTGGAAGTTATTGGT 46699 Query 78486 GGAGAGGATAAATA 78499 || | |||||||| Sbjct 46700 GGGGCTGATAAATA 46713 >seq1343 Length=1282261 Score = 93.3 bits (102), Expect = 5e-14 Identities = 173/254 (68%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 78246 GATGAAGGTCAATTTTTTAATGATATAGTGGAATTTTCTGAAAATATGGCAAATAAAGGA 78305 |||||||| ||||||||| |||||| || | |||| ||| | ||| || ||| Sbjct 1006583 GATGAAGGGCAATTTTTTCCTGATATTGTTCAGTTTTGTGACGAAATGTCATCACTTGGA 1006524 Query 78306 AAAATTGTTATTGTTTCGGCATTAGATGCTACATATCAAAGAAAAACATTTGGTAATATT 78365 || | ||||||||| | || ||||||| ||| | | || ||||| | || || | | Sbjct 1006523 AAGACTGTTATTGTGGCAGCTTTAGATGGTACCTTTGAACGAAAACCCTTCGGCTCTGTG 1006464 Query 78366 CTAAATTTAATTCCATTATCTGAAAAGGTAATAAAATTAAATGCTATATGTAAAATATGT 78425 || ||||||| ||| || |||| | || || ||| ||| || | || | | || Sbjct 1006463 CTCGATTTAATCCCAATAGCTGAGACTGTCATCAAACTAAGCGCAGTTTGCACATCTTGC 1006404 Query 78426 TTTAATGATGCTGCATTTACAAAAAGATTATGTGACGATACTAAAATTGAACTAATTGGT 78485 |||| || || || ||||||||||| | | ||| ||| | | ||| | |||||| Sbjct 1006403 TTTAGAGAAGCAGCTTTTACAAAAAGGCTGGGGTCCGAAACTGCAGTGGAAGTTATTGGT 1006344 Query 78486 GGAGAGGATAAATA 78499 || | |||||||| Sbjct 1006343 GGGGCTGATAAATA 1006330 >seq170 Length=769231 Score = 93.3 bits (102), Expect = 5e-14 Identities = 173/254 (68%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 78246 GATGAAGGTCAATTTTTTAATGATATAGTGGAATTTTCTGAAAATATGGCAAATAAAGGA 78305 |||||||| ||||||||| |||||| || | |||| ||| | ||| || ||| Sbjct 306156 GATGAAGGGCAATTTTTTCCTGATATTGTTCAGTTTTGTGACGAAATGTCATCACTTGGA 306215 Query 78306 AAAATTGTTATTGTTTCGGCATTAGATGCTACATATCAAAGAAAAACATTTGGTAATATT 78365 || | ||||||||| | || ||||||| ||| | | || ||||| | || || | | Sbjct 306216 AAGACTGTTATTGTGGCAGCTTTAGATGGTACCTTTGAACGAAAACCCTTCGGCTCTGTG 306275 Query 78366 CTAAATTTAATTCCATTATCTGAAAAGGTAATAAAATTAAATGCTATATGTAAAATATGT 78425 || ||||||| ||| || |||| | || || ||| ||| || | || | | || Sbjct 306276 CTCGATTTAATCCCAATAGCTGAGACTGTCATCAAACTAAGCGCAGTTTGCACATCTTGC 306335 Query 78426 TTTAATGATGCTGCATTTACAAAAAGATTATGTGACGATACTAAAATTGAACTAATTGGT 78485 |||| || || || ||||||||||| | | ||| ||| | | ||| | |||||| Sbjct 306336 TTTAGAGAAGCAGCTTTTACAAAAAGGCTGGGGTCCGAAACTGCAGTGGAAGTTATTGGT 306395 Query 78486 GGAGAGGATAAATA 78499 || | |||||||| Sbjct 306396 GGGGCTGATAAATA 306409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592064998724360