Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq16065 109 1e-18 >seq16065 Length=1342 Score = 109 bits (120), Expect = 1e-18 Identities = 205/295 (69%), Gaps = 11/295 (4%) Strand=Plus/Plus Query 150507 TGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACGTGTAG 150566 || ||||||| ||| | | ||| ||| |||||| |||||||||||| |||||||| || Sbjct 35 TGGATATGGGCGCACTGATTGCCGGTGCTAAGTTTCGTGGTGAATTTGAAGAACGCTTAA 94 Query 150567 A--CAAT-TTG--CTACAAGAACTAAA-AGAACGCGATGATGTTATTCTGTTCATCGATG 150620 | || | ||| | || ||||| || | | | | | ||||| || ||||||| Sbjct 95 AAGCAGTGTTGAACGACCCTGTCTAAACAGGAAGG--TCAAATCATTCTCTTTATCGATG 152 Query 150621 AAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATGAGCAATA 150680 ||||||| || | ||| || ||| | |||| || | ||||| |||||| Sbjct 153 AAATCCACACCCATGGGGGCGCCGGT---AAAGGCGATGGCGCCATGGATGCCGGCAATA 209 Query 150681 TGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGTCATCGGTGCAACAACCTACGATG 150740 || | |||||||| || | || ||||| | | | | ||||| || || || | Sbjct 210 TGCTCAAACCTGCCCTTGCGCGAGGTGAGTTGCACTGCGTGGGTGCGACGACACTGGACG 269 Query 150741 AATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGTCGTTTCATGAAGGT 150795 |||| |||||| ||||||||||||||||||| || ||||||||||| ||| || Sbjct 270 AATACCGTAAATACATTGAAAAAGATGCAGCGCTGGAGCGTCGTTTCCAGAAAGT 324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147090348600482