Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2986 87.8 3e-12 seq368 87.8 3e-12 >seq2986 Length=361983 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48164 CTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAA 48223 |||||||| | |||||||| | |||||||| | ||| | | || | ||||||| Sbjct 208752 CTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCTTTAACCAGAAA 208811 Query 48224 ATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTC 48283 || || || || || ||| ||| ||||| |||||||| | || || ||| | | | Sbjct 208812 ATGGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATGCGATTATTCGT 208871 Query 48284 TCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTG 48343 || | | |||| ||||||||| ||||| |||||||| |||||||||||| Sbjct 208872 TCAGCATACAGTGCGTCCTTGTCTGATATCCACTTGAGCGCCCACTCTGCCTTCTTCCGC 208931 Query 48344 ATGCATGGCATCGTCTCTATGGC 48366 | ||||||| || || ||||| Sbjct 208932 ACACATGGCAAGGTTTCGATGGC 208954 >seq368 Length=471785 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48164 CTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAA 48223 |||||||| | |||||||| | |||||||| | ||| | | || | ||||||| Sbjct 208559 CTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCTTTAACCAGAAA 208618 Query 48224 ATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTC 48283 || || || || || ||| ||| ||||| |||||||| | || || ||| | | | Sbjct 208619 ATGGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATGCGATTATTCGT 208678 Query 48284 TCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTG 48343 || | | |||| ||||||||| ||||| |||||||| |||||||||||| Sbjct 208679 TCAGCATACAGTGCGTCCTTGTCTGATATCCACTTGAGCGCCCACTCTGCCTTCTTCCGC 208738 Query 48344 ATGCATGGCATCGTCTCTATGGC 48366 | ||||||| || || ||||| Sbjct 208739 ACACATGGCAAGGTTTCGATGGC 208761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931136793762560