Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2986 89.7 1e-12 seq368 89.7 1e-12 seq637 86.0 1e-11 >seq2986 Length=361983 Score = 89.7 bits (98), Expect = 1e-12 Identities = 137/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 25821 GAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAG-CGCTACGTTTGGCGAGC 25879 || |||||| |||||| | |||||||| | ||| || | ||| || || || | Sbjct 208928 GAAGAAGGCAGAGTGGGCGCTCAAGTGGAT-ATCAGACAAGGACGCACTGTATGCTGAAC 208870 Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939 | | | || ||||| |||||||||| ||||||||||| ||||| ||||| ||||| | Sbjct 208869 GAATAATCGCATTTGCCTCTGTGGAGGGGATCTTTTTCAGTGGTTCATTTGCTGCCATTT 208810 Query 25940 TCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGC 25998 ||||| | ||| | ||| ||| || |||| ||||| ||||| || |||||||| Sbjct 208809 TCTGGTTAAAGAAACGAGGGTTGATG-CCTGGCTTAACTTTCTCCAATGAACTCATCAGT 208751 Query 25999 AGGGACGAGG 26008 || || |||| Sbjct 208750 AGAGATGAGG 208741 >seq368 Length=471785 Score = 89.7 bits (98), Expect = 1e-12 Identities = 137/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 25821 GAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAG-CGCTACGTTTGGCGAGC 25879 || |||||| |||||| | |||||||| | ||| || | ||| || || || | Sbjct 208735 GAAGAAGGCAGAGTGGGCGCTCAAGTGGAT-ATCAGACAAGGACGCACTGTATGCTGAAC 208677 Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939 | | | || ||||| |||||||||| ||||||||||| ||||| ||||| ||||| | Sbjct 208676 GAATAATCGCATTTGCCTCTGTGGAGGGGATCTTTTTCAGTGGTTCATTTGCTGCCATTT 208617 Query 25940 TCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGC 25998 ||||| | ||| | ||| ||| || |||| ||||| ||||| || |||||||| Sbjct 208616 TCTGGTTAAAGAAACGAGGGTTGATG-CCTGGCTTAACTTTCTCCAATGAACTCATCAGT 208558 Query 25999 AGGGACGAGG 26008 || || |||| Sbjct 208557 AGAGATGAGG 208548 >seq637 Length=333953 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 25821 GAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAG-CGCTACGTTTGGCGAGC 25879 || |||||| |||||| | |||||||| | ||| || | ||| || || || | Sbjct 28103 GAAGAAGGCAGAGTGGGCTCTCAAGTGGAT-ATCAGACAAGGACGCACTGTATGCTGAAC 28045 Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939 | | | || ||||| |||||||||| ||||||||||| || || ||||| ||||| | Sbjct 28044 GAATAATCGCATTTGCCTCTGTGGAGGGGATCTTTTTCAGTGGGTCATTTGCTGCCATTT 27985 Query 25940 TCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGC 25998 ||||| | ||| | ||| ||| || |||| ||||| ||||| || |||||||| Sbjct 27984 TCTGGTTAAAGAAACGAGGGCTGATG-CCTGGCTTAACTTTCTCCAATGAACTCATCAGT 27926 Query 25999 AGGGACGAGG 26008 || || |||| Sbjct 27925 AGAGATGAGG 27916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928449936464960