Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_020488.1 Length=38682 Score E Sequences producing significant alignments: (Bits) Value seq30152 143 7e-30 >seq30152 Length=637 Score = 143 bits (158), Expect = 7e-30 Identities = 312/465 (67%), Gaps = 4/465 (1%) Strand=Plus/Plus Query 16677 GCTGACTGAGGCAACTCAAGGTCAACCATTGCCAGGGCACAAGCATCACGATGGAACAGG 16736 || ||||| || | ||||||||||| ||| ||||| ||| || ||||| |||||||| Sbjct 4 GCCGACTGTGGAAGCTCAAGGTCAATCATAGCCAGTGCAATTGCGTCACGGTGGAACAGA 63 Query 16737 AAGTTCTGACGGTAGCTTGTGTCTGCGGTACCCAATACAGTGATAGCTGCACCATCTGCT 16796 |||| || ||| | | || |||| || || || ||||| | || Sbjct 64 TAGTTTTGCTCGTATGTAACACCAGCATTACCATGAACCGTAATTACTGCATTGGCAGCA 123 Query 16797 GGCGC--TGCTGACACGTTCTGGAATGCAGAAAGGCTAACAGTGTTACCTTCAGCATCCA 16854 || | || | ||| |||||| | |||| || ||||| | || ||||| | Sbjct 124 GGAACATTGGTAACA--TTCTGGTAAGCAGCAATCGAAACAGGATCGCCATCAGCGTTGT 181 Query 16855 CAGTGGTCAGTGTGCCATCGTTGATAGCAGGGCTTATCGGGATAGTCGCATTGCCAGTGC 16914 | ||| || || || |||||||| || | ||| ||||| || || | | Sbjct 182 TGATTGTCGCCGTACCGTCATTGATAGCTGGTGAAACCGGAATAGTTGCCAATCCGGCAC 241 Query 16915 CGTCACTGTTCACATCAGCTGTTACAACAAAGTGCTGTAGGCGGCCAGTTGACTGGTAGC 16974 | ||||| || |||||||| || |||||||| | |||||| ||| |||| ||| Sbjct 242 CATCACTATTAACATCAGCAGTGACAACAAACTCCTGTAGCATGCCGGTTGTTGTATAGT 301 Query 16975 TTTGCGGGTTAATCTCATAGACGCCGGCAAAGGTAATAACATCACCCTCTTTCAGCAATC 17034 | || ||||||| | || ||||| ||||||||||| || ||||| ||||||| | || Sbjct 302 TCTGAGGGTTAACACCGTATACGCCAGCAAAGGTAATCACGTCACCAGCTTTCAGAAGTC 361 Query 17035 CAGTGACGCCAGTATCCCAACCATCAGTCACAATGCTTGAACCGGTCTGGTCTGCACCAT 17094 | || | | | |||||| || | ||| || |||||| ||| || |||||| Sbjct 362 CTGTAATGGTTGCATCCCAGCCTTTTGTCGTAACGCTTGAGCCGTTCGCAATAACACCAT 421 Query 17095 TAGTCAATGGCGTACCACCATGCGCACCAACGGTATGAACAGGAA 17139 || ||| ||||||||| ||| |||||| || |||||||| |||| Sbjct 422 TAACCAAAGGCGTACCAGCATACGCACCGACCGTATGAACCGGAA 466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123610858735752