Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1072 89.7 6e-13 seq1038 89.7 6e-13 seq203 89.7 6e-13 >seq1072 Length=3228912 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 76496 AACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 76555 ||||||||| | || || ||||||||||| || ||||| || |||||| |||| ||||| Sbjct 2898377 AACAGTCTTCTCATAGCTCCAATGCCAACTGCATCCACTGCTCAAATCCTGGGAAATAAC 2898318 Query 76556 GAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGA 76597 |||| ||||||||||||||| || || ||| |||||| Sbjct 2898317 GAATCAATTGAACCATACACAAGTAATATATACACCAGAAGA 2898276 >seq1038 Length=472731 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 76496 AACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 76555 ||||||||| | || || ||||||||||| || ||||| || |||||| |||| ||||| Sbjct 78749 AACAGTCTTCTCATAGCTCCAATGCCAACTGCATCCACTGCTCAAATCCTGGGAAATAAC 78690 Query 76556 GAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGA 76597 |||| ||||||||||||||| || || ||| |||||| Sbjct 78689 GAATCAATTGAACCATACACAAGTAATATATACACCAGAAGA 78648 >seq203 Length=1902415 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 76496 AACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 76555 ||||||||| | || || ||||||||||| || ||||| || |||||| |||| ||||| Sbjct 1535455 AACAGTCTTCTCATAGCTCCAATGCCAACTGCATCCACTGCTCAAATCCTGGGAAATAAC 1535396 Query 76556 GAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGA 76597 |||| ||||||||||||||| || || ||| |||||| Sbjct 1535395 GAATCAATTGAACCATACACAAGTAATATATACACCAGAAGA 1535354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596315990805920