Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2409 89.7 1e-12 seq1430 89.7 1e-12 seq38 89.7 1e-12 >seq2409 Length=1160440 Score = 89.7 bits (98), Expect = 1e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | || || || | ||| | || | ||| || ||| || |||||| Sbjct 33559 ACCACCTCTCAACCGCAAAACAAGATGAAGCGTGGACTCCTTCTGGATGTTGTAATCACT 33500 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || ||| |||| || | |||||||||||| ||||| || ||||||||||||||||| Sbjct 33499 CAAAGTGCGTCCATCTTCAAGTTGTTTACCAGCGAAGATCAACCTCTGTTGATCAGGTGG 33440 Query 192429 TATTCCT 192435 |||||| Sbjct 33439 AATTCCT 33433 >seq1430 Length=1223854 Score = 89.7 bits (98), Expect = 1e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | || || || | ||| | || | ||| || ||| || |||||| Sbjct 153186 ACCACCTCTCAACCGCAAAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAATCACT 153127 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || |||||| |||| || | |||||||||||| ||||| || ||||| ||||||||||| Sbjct 153126 CAAAGTTCGTCCATCTTCAAGTTGTTTACCAGCGAAGATCAACCTCTGCTGATCAGGTGG 153067 Query 192429 TATTCCT 192435 |||||| Sbjct 153066 AATTCCT 153060 >seq38 Length=948742 Score = 89.7 bits (98), Expect = 1e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | || || || | ||| | || | ||| || ||| || |||||| Sbjct 133403 ACCACCTCTCAACCGCAAAACAAGATGAAGCGTGGACTCCTTCTGGATGTTGTAATCACT 133344 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || ||| |||| || | |||||||||||| ||||| || ||||||||||||||||| Sbjct 133343 CAAAGTGCGTCCATCTTCAAGTTGTTTACCAGCGAAGATCAACCTCTGTTGATCAGGTGG 133284 Query 192429 TATTCCT 192435 |||||| Sbjct 133283 AATTCCT 133277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984051022377150