Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1174 98.7 3e-15 seq1447 93.3 1e-13 seq5 93.3 1e-13 >seq1174 Length=457628 Score = 98.7 bits (108), Expect = 3e-15 Identities = 134/185 (72%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 106906 CATAGCAAAAGACGAACTCATACCATAGAAAAACTTGAACTTTTTACCATCTTC-CTCA- 106963 ||| ||| ||| || ||||| || ||||| ||||| | ||||||||| ||||| || | Sbjct 293569 CATCGCAGTAGAAGAGCTCATTCCGTAGAACAACTTCACCTTTTTACCGTCTTCTCTAAC 293628 Query 106964 -ATTAACTTACCTGGATTTTCATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAATC 107022 ||| | ||| | | ||| || || || || | || || | |||||| ||||| Sbjct 293629 GATTGTTTCACCACCAGACTGATCATGACCTGCGAATAGCCCACCCAACATTACAAAATC 293688 Query 107023 AGCCCCGCCACCGAATGCTTTAGCCATATCACCAGGGCAAGTAATTCCACCATCACTAAT 107082 |||||| | || || |||||||||| ||| || ||||||||| ||| |||||| || Sbjct 293689 AGCCCCAGCTCCAAACGCTTTAGCCACATCGCCGGGGCAAGTACATCCCCCATCAGATAT 293748 Query 107083 AATAT 107087 ||||| Sbjct 293749 AATAT 293753 >seq1447 Length=383399 Score = 93.3 bits (102), Expect = 1e-13 Identities = 127/175 (73%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 106916 GACGAACTCATACCATAGAAAAACTTGAACTTTTTACCATCTTC-CTCA--ATTAACTTA 106972 || || ||||| || ||||| ||||| | ||||||||| ||||| || | ||| | | Sbjct 136368 GAAGAGCTCATTCCGTAGAACAACTTCACCTTTTTACCGTCTTCTCTAACGATTGTTTCA 136309 Query 106973 CCTGGATTTTCATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAATCAGCCCCGCCA 107032 || | | ||| || || || || | || || | |||||| ||||||||||| | Sbjct 136308 CCACCAGACTGATCATGACCTGCGAATAGCCCACCCAACATTACAAAATCAGCCCCAGCT 136249 Query 107033 CCGAATGCTTTAGCCATATCACCAGGGCAAGTAATTCCACCATCACTAATAATAT 107087 || || |||||||||| ||| || ||||||||| ||| |||||| ||||||| Sbjct 136248 CCAAACGCTTTAGCCACATCGCCGGGGCAAGTACATCCCCCATCAGATATAATAT 136194 >seq5 Length=402880 Score = 93.3 bits (102), Expect = 1e-13 Identities = 127/175 (73%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 106916 GACGAACTCATACCATAGAAAAACTTGAACTTTTTACCATCTTC-CTCA--ATTAACTTA 106972 || || ||||| || ||||| ||||| | ||||||||| ||||| || | ||| | | Sbjct 125060 GAAGAGCTCATTCCGTAGAACAACTTCACCTTTTTACCGTCTTCTCTAACGATTGTTTCA 125001 Query 106973 CCTGGATTTTCATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAATCAGCCCCGCCA 107032 || | | ||| || || || || | || || | |||||| ||||||||||| | Sbjct 125000 CCACCAGACTGATCATGACCTGCGAATAGCCCACCCAACATTACAAAATCAGCCCCAGCT 124941 Query 107033 CCGAATGCTTTAGCCATATCACCAGGGCAAGTAATTCCACCATCACTAATAATAT 107087 || || |||||||||| ||| || ||||||||| ||| |||||| ||||||| Sbjct 124940 CCAAACGCTTTAGCCACATCGCCGGGGCAAGTACATCCCCCATCAGATATAATAT 124886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471176269739033