Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_021557.1 Length=37378 Score E Sequences producing significant alignments: (Bits) Value seq27395 91.5 4e-14 >seq27395 Length=1067 Score = 91.5 bits (100), Expect = 4e-14 Identities = 184/271 (68%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 36266 TATGCGGAAGTCTTCGTCGGTATGGGTGGCGTCTTCCTCCGCCGTGATCTCCAGCCTCGT 36325 |||| ||| ||| ||||| |||||||| || ||| | ||||| || || | Sbjct 640 TATGTCGAACCCTTTGTCGGCATGGGTGGTGTGTTCTTGCGCCGACCGTTCAAGGCGTAC 581 Query 36326 ATTGAAGTCATCAACGATATCAGCGGCGATGTGGCTAATCTGTTCCGTATTCTCCAGCGC 36385 | || ||||| ||||| |||| || || | | ||||||||| | | | ||||| Sbjct 580 AGCGAGGTCATAAACGACATCAATGGTGAGCTTGTAAATCTGTTCAGGGTCTTGCAGCGG 521 Query 36386 CACTATCCGCAGTTTATGGAAACCCTTCGGTTCCAGATCACGTCACGACGCGAGTTCGAA 36445 ||||||||||| || ||||| || ||| ||| | | || | || ||||| ||| Sbjct 520 CACTATCCGCAATTCATGGACTGTCTAAAGTTTCAGGTTGCTTCCAGGCGGGAGTTTGAA 461 Query 36446 CGGCTCTCGAAAGT--CGATCCTTCGACGCTAACCGACCTGGAGCGCGCCGCTCGCTTCC 36503 || |||| || | ||||| | ||| |||||||||||||||| || || || || | Sbjct 460 CG--TCTCAAATCTTCGGATCCCGCTACGTTAACCGACCTGGAGCGAGCGGCGCGGTTTC 403 Query 36504 TCTATCTCCAGCGCACTGCCTTCGGCGGTAA 36534 | || || ||| | | || ||||| || || Sbjct 402 TTTACCTGCAGAGAATGGCATTCGGTGGGAA 372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119439743949720