Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1072 95.1 1e-14 seq1038 89.7 5e-13 seq203 89.7 5e-13 seq737 86.0 6e-12 seq460 86.0 6e-12 seq185 86.0 6e-12 >seq1072 Length=3228912 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 139121 TGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGAT 139180 |||| ||||| ||||| | |||| || || ||| ||||| || | ||||||||||| Sbjct 2900816 TGTACTCGACGATTTCCGTGCACAGGTTCGAACTCTTAATCGTCCCCAGATTTTGTTGAT 2900875 Query 139181 TGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTG 139240 | ||||| |||||| || ||||| || ||||| ||||||||||| ||||| | |||| Sbjct 2900876 TTGATTTTCTGTTACACGCGTCTTTATATAGCATGTACGGTGTGCCGGTTTCGATCTGTG 2900935 Query 139241 TCTCTAT 139247 ||| || Sbjct 2900936 CCTCGAT 2900942 >seq1038 Length=472731 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 139121 TGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGAT 139180 |||| || || ||||| | |||| || || ||| ||||| || | ||||||||||| Sbjct 80339 TGTACTCAACGATTTCCGTGCACAGGTTCGAACTCTTAATCGTCCCAAGATTTTGTTGAT 80398 Query 139181 TGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTG 139240 | ||||| |||||| || ||||| |||||||| || |||||||| ||||| | |||| Sbjct 80399 TTGATTTTCTGTTACACGCGTCTTTATAAAGCATGTAGGGTGTGCCGGTTTCGATCTGTG 80458 Query 139241 TCTCTAT 139247 ||| || Sbjct 80459 CCTCGAT 80465 >seq203 Length=1902415 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 139121 TGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGAT 139180 |||| || || ||||| | |||| || || ||| ||||| || | ||||||||||| Sbjct 1537045 TGTACTCAACGATTTCCGTGCACAGGTTCGAACTCTTAATCGTCCCAAGATTTTGTTGAT 1537104 Query 139181 TGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTG 139240 | ||||| |||||| || ||||| |||||||| || |||||||| ||||| | |||| Sbjct 1537105 TTGATTTTCTGTTACACGCGTCTTTATAAAGCATGTAGGGTGTGCCGGTTTCGATCTGTG 1537164 Query 139241 TCTCTAT 139247 ||| || Sbjct 1537165 CCTCGAT 1537171 >seq737 Length=1614662 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| |||||| | || || || |||||||||||||| || || || ||||||||| | Sbjct 6119 GATGCAAATCTTTGTCAAGACTCTTACCGGTAAAACTATCACCCTTGAGGTAGAAGCCTC 6060 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGG 24807 || | | || | || || ||||||||||| ||||||||||| Sbjct 6059 TGATAGTATTGACAATGTCAAGCAAAAGATCCAGGACAAAGAAGG 6015 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| |||||| | || || || |||||||||||||| || || || ||||||||| | Sbjct 31733 GATGCAAATCTTTGTCAAGACTCTTACCGGTAAAACTATCACCCTTGAGGTAGAAGCCTC 31674 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGG 24807 || | | || | || || ||||||||||| ||||||||||| Sbjct 31673 TGATAGTATTGACAATGTCAAGCAAAAGATCCAGGACAAAGAAGG 31629 >seq460 Length=260977 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| |||||| | || || || |||||||||||||| || || || ||||||||| | Sbjct 216794 GATGCAAATCTTTGTCAAGACCCTTACCGGTAAAACTATCACACTTGAGGTAGAAGCCTC 216735 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGG 24807 || | | || | || || ||||||||||| ||||||||||| Sbjct 216734 TGATAGTATTGACAATGTCAAGCAAAAGATCCAGGACAAAGAAGG 216690 >seq185 Length=2393798 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| |||||| | || || || |||||||||||||| || || || ||||||||| | Sbjct 409530 GATGCAAATCTTTGTCAAGACTCTTACCGGTAAAACTATCACCCTTGAGGTAGAAGCCTC 409471 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGG 24807 || | | || | || || ||||||||||| ||||||||||| Sbjct 409470 TGATAGTATTGACAATGTCAAGCAAAAGATCCAGGACAAAGAAGG 409426 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| |||||| | || || || |||||||||||||| || || || ||||||||| | Sbjct 418360 GATGCAAATCTTTGTCAAGACCCTTACCGGTAAAACTATCACACTTGAGGTAGAAGCCTC 418301 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGG 24807 || | | || | || || ||||||||||| ||||||||||| Sbjct 418300 TGATAGTATTGACAATGTCAAGCAAAAGATCCAGGACAAAGAAGG 418256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449706342906520