Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq498 87.8 1e-12 seq200 87.8 1e-12 seq1607 82.4 6e-11 >seq498 Length=2034514 Score = 87.8 bits (96), Expect = 1e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CG 29617 |||||| || | ||| || ||||| ||||| ||||| ||||| || ||||| || || | Sbjct 1868616 TCCTCCTCTAAGACGAAGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCT 1868557 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 ||||| |||| ||| || |||||||| ||||| | || | | |||||||||||| | Sbjct 1868556 CAATG-TGCGGCCATCTTCAAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCCGGAG 1868498 Query 29678 GAATACC 29684 |||| || Sbjct 1868497 GAATTCC 1868491 >seq200 Length=1515198 Score = 87.8 bits (96), Expect = 1e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CG 29617 |||||| || | ||| || ||||| ||||| ||||| ||||| || ||||| || || | Sbjct 876023 TCCTCCTCTAAGACGAAGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCT 876082 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 ||||| |||| ||| || |||||||| ||||| | || | | |||||||||||| | Sbjct 876083 CAATG-TGCGGCCATCTTCAAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCCGGAG 876141 Query 29678 GAATACC 29684 |||| || Sbjct 876142 GAATTCC 876148 >seq1607 Length=2233834 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CG 29617 |||||| || | ||| || ||||| ||||| ||||| ||||| || ||||| || || | Sbjct 1461206 TCCTCCTCTAAGACGAAGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCT 1461265 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 ||||| |||| ||| || || ||||| |||||| | || | | |||||||||||| | Sbjct 1461266 CAATG-TGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATGAGACGTTGCTGATCCGGAG 1461324 Query 29678 GAATACC 29684 | || || Sbjct 1461325 GGATTCC 1461331 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CG 29617 |||||| || | ||| || ||||| ||||| ||||| |||||||||||||| || || | Sbjct 1467392 TCCTCCTCTAAGACGAAGGACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGCT 1467451 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 |||| ||||| ||| || || ||||| ||||| | || | | ||||||||| || | Sbjct 1467452 CAAT-GTGCGGCCATCTTCAAGCTGTTTTCCAGCGAAGATAAGACGTTGCTGATCGGGAG 1467510 Query 29678 GAATACC 29684 | || || Sbjct 1467511 GGATTCC 1467517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385059532540269