Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq562 84.2 4e-11 seq486 84.2 4e-11 seq212 84.2 4e-11 >seq562 Length=1067592 Score = 84.2 bits (92), Expect = 4e-11 Identities = 160/235 (68%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 142960 TTTATACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCATA 143019 ||||| ||||| |||||||||||| ||| || || ||| || |||||| Sbjct 601107 TTTATGAGGATAAGGATGAGTGGACT---TGGTCTAAGATGGGGGATAAGGTTCTGCATA 601051 Query 143020 TAGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAG 143079 | |||||| | ||||| || || ||| ||||||||||||| || ||||| || | Sbjct 601050 TTGAACTTCGTTCTTGGGCTGACGTGTTTGTTATAGCGCCCTTGGATGCTAATACATTGG 600991 Query 143080 CAAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATA 143139 ||| | ||| || || || || ||||| |||||| ||| | | || ||| | | Sbjct 600990 GAAAGCTGTCCAGTGGGATTTGTGACAATTTGGTAACATGTATCGCCCGTGCTTGGAAAA 600931 Query 143140 TAAATAAACCTCTTATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCC 143194 | | |||| || || |||||||| || ||||| |||||||||| || || Sbjct 600930 TTGGTGAACCACTAATATTTTGTCCAGCCATGAACTCTTTTATGTGGGATCACCC 600876 >seq486 Length=896465 Score = 84.2 bits (92), Expect = 4e-11 Identities = 160/235 (68%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 142960 TTTATACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCATA 143019 ||||| ||||| |||||||||||| ||| || || ||| || |||||| Sbjct 496770 TTTATGAGGATAAGGATGAGTGGACT---TGGTCTAAGATGGGGGATAAGGTTCTGCATA 496826 Query 143020 TAGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAG 143079 | |||||| | ||||| || || ||| ||||||||||||| || |||||| | | Sbjct 496827 TTGAACTTCGCTCTTGGGCTGACGTGTTTGTTATAGCGCCCTTGGATGCTAATACGCTGG 496886 Query 143080 CAAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATA 143139 ||| | ||| || || || || ||||| |||||| ||| | | || ||| | | Sbjct 496887 GAAAGCTGTCCAGTGGGATTTGTGACAATTTGGTAACATGTATCGCCCGTGCTTGGAAAA 496946 Query 143140 TAAATAAACCTCTTATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCC 143194 | | |||| || || |||||||| || ||||| |||||||||| || || Sbjct 496947 TTGGTGAACCACTGATATTTTGTCCAGCCATGAACTCTTTTATGTGGGATCACCC 497001 >seq212 Length=1083884 Score = 84.2 bits (92), Expect = 4e-11 Identities = 160/235 (68%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 142960 TTTATACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCATA 143019 ||||| ||||| |||||||||||| ||| || || ||| || |||||| Sbjct 663425 TTTATGAGGATAAGGATGAGTGGACT---TGGTCTAAGATGGGGGATAAGGTTCTGCATA 663369 Query 143020 TAGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAG 143079 | |||||| | ||||| || || ||| ||||||||||||| || |||||| | | Sbjct 663368 TTGAACTTCGCTCTTGGGCTGACGTGTTTGTTATAGCGCCCTTGGATGCTAATACGCTGG 663309 Query 143080 CAAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATA 143139 ||| | ||| || || || || ||||| |||||| ||| | | || ||| | | Sbjct 663308 GAAAGCTGTCCAGTGGGATTTGTGACAATTTGGTAACATGTATCGCCCGTGCTTGGAAAA 663249 Query 143140 TAAATAAACCTCTTATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCC 143194 | | |||| || || |||||||| || ||||| |||||||||| || || Sbjct 663248 TTGGTGAACCACTGATATTTTGTCCAGCCATGAACTCTTTTATGTGGGATCACCC 663194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903027148606240