Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1607 87.8 4e-12 seq498 87.8 4e-12 seq200 87.8 4e-12 >seq1607 Length=2233834 Score = 87.8 bits (96), Expect = 4e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 ||||||||| ||||||||||||| || ||||| ||| || | |||||||| ||||| Sbjct 1461788 GTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTG 1461847 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||| ||||||||||| ||||| ||| Sbjct 1461848 TTTTCCAGCGAAGATAAGACGTTGCTGA 1461875 Score = 87.8 bits (96), Expect = 4e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 ||||||||| ||||||||||||| || ||||| ||| || | |||||||| ||||| Sbjct 1463834 GTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTG 1463893 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||| |||||||| || ||||| ||| Sbjct 1463894 CTTTCCAGCGAAGATGAGACGTTGCTGA 1463921 Score = 87.8 bits (96), Expect = 4e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 ||||||||| ||||||||||||| || ||||| ||| || | |||||||| ||||| Sbjct 1468435 GTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTG 1468494 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||| ||||||||||| ||||| ||| Sbjct 1468495 TTTTCCAGCGAAGATAAGACGTTGCTGA 1468522 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| | ||||||||||| ||||| ||| | |||||||| | || ||| ||| |||||| Sbjct 1461871 CAACGTCTTATCTTCGCTGGAAAACAGCTTGAAGATGGCCGCACATTGAGCGACTACAAC 1461812 Query 206350 GTCCAGAAAGAGTCTACTCTTCAC 206373 ||||||||||||| ||||||||| Sbjct 1461811 ATCCAGAAAGAGTCCACTCTTCAC 1461788 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| | || |||||||| ||||||||| | |||||||| | || ||| ||| |||||| Sbjct 1463917 CAACGTCTCATCTTCGCTGGAAAGCAGCTTGAAGATGGCCGCACATTGAGCGACTACAAC 1463858 Query 206350 GTCCAGAAAGAGTCTACTCTTCAC 206373 ||||||||||||| ||||||||| Sbjct 1463857 ATCCAGAAAGAGTCCACTCTTCAC 1463834 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| | ||||||||||| ||||| ||| | |||||||| | || ||| ||| |||||| Sbjct 1468518 CAACGTCTTATCTTCGCTGGAAAACAGCTTGAAGATGGCCGCACATTGAGCGACTACAAC 1468459 Query 206350 GTCCAGAAAGAGTCTACTCTTCAC 206373 ||||||||||||| ||||||||| Sbjct 1468458 ATCCAGAAAGAGTCCACTCTTCAC 1468435 >seq498 Length=2034514 Score = 87.8 bits (96), Expect = 4e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 ||||||||| ||||||||||||| || ||||| ||| || | |||||||| ||||| Sbjct 1870191 GTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTG 1870132 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||| ||||||||||| ||||| ||| Sbjct 1870131 TTTTCCAGCGAAGATAAGACGTTGCTGA 1870104 Score = 87.8 bits (96), Expect = 4e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 ||||||||| ||||||||||||| || ||||| ||| || | |||||||| ||||| Sbjct 1870680 GTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTG 1870621 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||| ||||||||||| ||||| ||| Sbjct 1870620 TTTTCCAGCGAAGATAAGACGTTGCTGA 1870593 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| | ||||||||||| ||||| ||| | |||||||| | || ||| ||| |||||| Sbjct 1870108 CAACGTCTTATCTTCGCTGGAAAACAGCTTGAAGATGGCCGCACATTGAGCGACTACAAC 1870167 Query 206350 GTCCAGAAAGAGTCTACTCTTCAC 206373 ||||||||||||| ||||||||| Sbjct 1870168 ATCCAGAAAGAGTCCACTCTTCAC 1870191 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| | ||||||||||| ||||| ||| | |||||||| | || ||| ||| |||||| Sbjct 1870597 CAACGTCTTATCTTCGCTGGAAAACAGCTTGAAGATGGCCGCACATTGAGCGACTACAAC 1870656 Query 206350 GTCCAGAAAGAGTCTACTCTTCAC 206373 ||||||||||||| ||||||||| Sbjct 1870657 ATCCAGAAAGAGTCCACTCTTCAC 1870680 >seq200 Length=1515198 Score = 87.8 bits (96), Expect = 4e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 ||||||||| ||||||||||||| || ||||| ||| || | |||||||| ||||| Sbjct 873959 GTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTG 874018 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||| ||||||||||| ||||| ||| Sbjct 874019 TTTTCCAGCGAAGATAAGACGTTGCTGA 874046 Score = 87.8 bits (96), Expect = 4e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 ||||||||| ||||||||||||| || ||||| ||| || | |||||||| ||||| Sbjct 874448 GTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTG 874507 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||| ||||||||||| ||||| ||| Sbjct 874508 TTTTCCAGCGAAGATAAGACGTTGCTGA 874535 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| | ||||||||||| ||||| ||| | |||||||| | || ||| ||| |||||| Sbjct 874042 CAACGTCTTATCTTCGCTGGAAAACAGCTTGAAGATGGCCGCACATTGAGCGACTACAAC 873983 Query 206350 GTCCAGAAAGAGTCTACTCTTCAC 206373 ||||||||||||| ||||||||| Sbjct 873982 ATCCAGAAAGAGTCCACTCTTCAC 873959 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| | ||||||||||| ||||| ||| | |||||||| | || ||| ||| |||||| Sbjct 874531 CAACGTCTTATCTTCGCTGGAAAACAGCTTGAAGATGGCCGCACATTGAGCGACTACAAC 874472 Query 206350 GTCCAGAAAGAGTCTACTCTTCAC 206373 ||||||||||||| ||||||||| Sbjct 874471 ATCCAGAAAGAGTCCACTCTTCAC 874448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181305833035289