Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1607 87.8 2e-12 seq498 82.4 7e-11 seq200 82.4 7e-11 >seq1607 Length=2233834 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||||||||||||||||||||||| || || |||||| |||||||| || | Sbjct 1467426 GACTCTTTTTGAATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTGTTTTCCAGCG 1467485 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 |||| ||||| || ||||| ||||| || ||| Sbjct 1467486 AAGATAAGACGTTGCTGATCGGGAGGGATTCCT 1467518 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | |||||||||| || ||||||||||| |||| || || |||||| Sbjct 1467909 ACCAAGTGAAGAGTTGACTCTTTCTGGATGTTGTAGTCACTCAATGTGCGGCCATCTTCA 1467968 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 ||||||||||| | | |||| ||||| || ||||| ||||| || ||| Sbjct 1467969 AGCTGTTTACCAGCAAAGATGAGACGTTGCTGATCCGGAGGGATTCCT 1468016 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || |||||||||||||||| || || |||||| |||||||| || | | Sbjct 1461240 GACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTGTTTTCCAGCA 1461299 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 |||| ||||| || ||||| ||||| || ||| Sbjct 1461300 AAGATGAGACGTTGCTGATCCGGAGGGATTCCT 1461332 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || |||||||||||||||| || || |||||| || ||||| || | | Sbjct 1463314 GACTCTTTCTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTCAAGTTGTTTTCCAGCA 1463373 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 |||| ||||| || ||||| |||||||| ||| Sbjct 1463374 AAGATAAGACGTTGCTGATCGGGAGGTATTCCT 1463406 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || |||||||||||||||| || || |||||| |||||||| || | | Sbjct 1465097 GACTCTTTCTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTCAAGCTGTTTTCCAGCA 1465156 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 |||| ||||| || ||||| ||||| || ||| Sbjct 1465157 AAGATAAGACGTTGCTGATCGGGAGGGATTCCT 1465189 >seq498 Length=2034514 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || |||||||||||||||| || || |||||| ||||||||||| | Sbjct 1866445 GACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTGTTTACCAGCG 1866386 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 |||| ||||| || ||||| ||||| || ||| Sbjct 1866385 AAGATAAGACGTTGCTGATCCGGAGGGATTCCT 1866353 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || |||||||||||||||| || || |||||| |||||||| || | | Sbjct 1869030 GACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTGTTTTCCAGCA 1868971 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 |||| ||||| || ||||| ||||| || ||| Sbjct 1868970 AAGATGAGACGTTGCTGATCGGGAGGGATTCCT 1868938 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || |||||||||||||||| || || |||||| |||||||| || | | Sbjct 1869520 GACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTGTTTTCCAGCA 1869461 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 |||| ||||| || ||||| ||||| || ||| Sbjct 1869460 AAGATGAGACGTTGCTGATCGGGAGGGATTCCT 1869428 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || |||||||||||||||| || || |||||| |||||||| || | | Sbjct 1871653 GACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTGTTTTCCAGCA 1871594 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 |||| ||||| || ||||| ||||| || ||| Sbjct 1871593 AAGATAAGACGTTGCTGATCGGGAGGGATTCCT 1871561 >seq200 Length=1515198 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || |||||||||||||||| || || |||||| |||||||| || | | Sbjct 872986 GACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTGTTTTCCAGCA 873045 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 |||| ||||| || ||||| ||||| || ||| Sbjct 873046 AAGATAAGACGTTGCTGATCGGGAGGGATTCCT 873078 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || |||||||||||||||| || || |||||| |||||||| || | | Sbjct 875119 GACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTGTTTTCCAGCA 875178 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 |||| ||||| || ||||| ||||| || ||| Sbjct 875179 AAGATGAGACGTTGCTGATCGGGAGGGATTCCT 875211 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || |||||||||||||||| || || |||||| |||||||| || | | Sbjct 875609 GACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTGTTTTCCAGCA 875668 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 |||| ||||| || ||||| ||||| || ||| Sbjct 875669 AAGATGAGACGTTGCTGATCGGGAGGGATTCCT 875701 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || |||||||||||||||| || || |||||| ||||||||||| | Sbjct 878194 GACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCTTCAAGCTGTTTACCAGCG 878253 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 |||| ||||| || ||||| ||||| || ||| Sbjct 878254 AAGATAAGACGTTGCTGATCCGGAGGGATTCCT 878286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476408586621240