Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1607 87.8 2e-12 seq498 84.2 2e-11 seq200 84.2 2e-11 >seq1607 Length=2233834 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||||||||| || || | || | ||| || ||||| || ||||||||||||||||||| Sbjct 1467391 TTCCTCCTCTAAGACGAAGGACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGC 1467450 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | || || |||||||| || || || || | ||| ||||||||||| | Sbjct 1467451 TCAATGTGCGGCCATCTTCAAGCTGTTTTCCAGCGAAGATAAGACGTTGCTGATCGGGAG 1467510 Query 134605 GTATGCCT 134612 | || ||| Sbjct 1467511 GGATTCCT 1467518 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||||||||| || || | || | ||| || ||||| || || || ||||||||||||| Sbjct 1463279 TTCCTCCTCTAAGACGAAGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGC 1463338 Query 134545 -CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 |||| ||| | || || || ||||| || ||||| || | ||| ||||||||||| Sbjct 1463339 TCAAC-GTGCGGCCATCTTCAAGTTGTTTTCCAGCAAAGATAAGACGTTGCTGATCGGGA 1463397 Query 134604 GGTATGCCT 134612 ||||| ||| Sbjct 1463398 GGTATTCCT 1463406 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||||||||| || || | || | ||| || ||||| || || || ||||||||||||| Sbjct 1465062 TTCCTCCTCTAAGACGAAGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGC 1465121 Query 134545 -CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 |||| ||| | || || |||||||| || ||||| || | ||| ||||||||||| Sbjct 1465122 TCAAC-GTGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATAAGACGTTGCTGATCGGGA 1465180 Query 134604 GGTATGCCT 134612 || || ||| Sbjct 1465181 GGGATTCCT 1465189 >seq498 Length=2034514 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||||||||| || || | || | ||| || ||||| || || || |||||||||||| Sbjct 1871689 TTTCCTCCTCTAAGACGAAGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCG 1871630 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | ||| | || || |||||||| || ||||| || | ||| ||||||||||| Sbjct 1871629 CTCAATGTGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATAAGACGTTGCTGATCGGGA 1871570 Query 134604 GGTATGCCT 134612 || || ||| Sbjct 1871569 GGGATTCCT 1871561 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||||||||| || || | || | ||| || ||||| || || || ||||||||||||| Sbjct 1869065 TTCCTCCTCTAAGACGAAGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGC 1869006 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | || || |||||||| || ||||| || | ||| ||||||||||| | Sbjct 1869005 TCAATGTGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATGAGACGTTGCTGATCGGGAG 1868946 Query 134605 GTATGCCT 134612 | || ||| Sbjct 1868945 GGATTCCT 1868938 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||||||||| || || | || | ||| || ||||| || || || ||||||||||||| Sbjct 1869555 TTCCTCCTCTAAGACGAAGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGC 1869496 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | || || |||||||| || ||||| || | ||| ||||||||||| | Sbjct 1869495 TCAATGTGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATGAGACGTTGCTGATCGGGAG 1869436 Query 134605 GTATGCCT 134612 | || ||| Sbjct 1869435 GGATTCCT 1869428 >seq200 Length=1515198 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||||||||| || || | || | ||| || ||||| || || || |||||||||||| Sbjct 872950 TTTCCTCCTCTAAGACGAAGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCG 873009 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | ||| | || || |||||||| || ||||| || | ||| ||||||||||| Sbjct 873010 CTCAATGTGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATAAGACGTTGCTGATCGGGA 873069 Query 134604 GGTATGCCT 134612 || || ||| Sbjct 873070 GGGATTCCT 873078 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||||||||| || || | || | ||| || ||||| || || || ||||||||||||| Sbjct 875084 TTCCTCCTCTAAGACGAAGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGC 875143 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | || || |||||||| || ||||| || | ||| ||||||||||| | Sbjct 875144 TCAATGTGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATGAGACGTTGCTGATCGGGAG 875203 Query 134605 GTATGCCT 134612 | || ||| Sbjct 875204 GGATTCCT 875211 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||||||||| || || | || | ||| || ||||| || || || ||||||||||||| Sbjct 875574 TTCCTCCTCTAAGACGAAGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGC 875633 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | || || |||||||| || ||||| || | ||| ||||||||||| | Sbjct 875634 TCAATGTGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATGAGACGTTGCTGATCGGGAG 875693 Query 134605 GTATGCCT 134612 | || ||| Sbjct 875694 GGATTCCT 875701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505183548822680