Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1875 105 1e-17 seq217 105 1e-17 seq1515 96.9 5e-15 >seq1875 Length=102641 Score = 105 bits (116), Expect = 1e-17 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 161347 GGTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGT 161406 ||| || || | || || ||||| || || || |||||||| ||||| ||||| | | Sbjct 52018 GGTCCAGGAAATCCCCCAAAAAGAGACGACCCCGTTCTACCCCCGATCCCCATACGCGGC 52077 Query 161407 AGCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGC 161466 ||| || |||| | |||||||| || ||||||||||||| || ||||||||||| Sbjct 52078 AGCGAAGGTCTACGCGTATTGGATCGTGGTGAACTACAGAGAGGCATACGGGATGCACGC 52137 Query 161467 CAGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCG 161526 ||| | ||| || || |||||||| ||| || ||||| || | ||||| || | Sbjct 52138 CAGCAATGGGATCCTCTTCAACCACGAGAGCCCTCGACGAGGATTCAACTTCGTCACGAG 52197 Query 161527 TAAGATTACTAGG 161539 ||||| || ||| Sbjct 52198 GAAGATAACGAGG 52210 >seq217 Length=94768 Score = 105 bits (116), Expect = 1e-17 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 161347 GGTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGT 161406 ||| || || | || || ||||| || || || |||||||| ||||| ||||| | | Sbjct 44145 GGTCCAGGAAATCCCCCAAAAAGAGACGACCCCGTTCTACCCCCGATCCCCATACGCGGC 44204 Query 161407 AGCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGC 161466 ||| || |||| | |||||||| || ||||||||||||| || ||||||||||| Sbjct 44205 AGCGAAGGTCTACGCGTATTGGATCGTGGTGAACTACAGAGAGGCATACGGGATGCACGC 44264 Query 161467 CAGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCG 161526 ||| | ||| || || |||||||| ||| || ||||| || | ||||| || | Sbjct 44265 CAGCAATGGGATCCTCTTCAACCACGAGAGCCCTCGACGAGGATTCAACTTCGTCACGAG 44324 Query 161527 TAAGATTACTAGG 161539 ||||| || ||| Sbjct 44325 GAAGATAACGAGG 44337 >seq1515 Length=55082 Score = 96.9 bits (106), Expect = 5e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 161347 GGTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGT 161406 ||| || || | || || ||||| || || || |||||||| || || ||||| | | Sbjct 38361 GGTCCAGGAAATCCCCCAAAAAGAGACGACCCCATTCTACCCCCGGTCCCCATACGCGGC 38420 Query 161407 AGCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGC 161466 ||| || |||| | || |||||||| |||||||||||| || ||||||||||| Sbjct 38421 AGCGAAGGTCTACGCGTACTGGATTGTGGTGAACTACAGAGAAGCATACGGGATGCACGC 38480 Query 161467 CAGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCG 161526 || | ||| || || |||||||| ||| || ||||| || | ||||| ||| | Sbjct 38481 GAGCAATGGGATCCTCTTCAACCACGAGAGCCCTCGACGAGGATTCAACTTCGTCACCAG 38540 Query 161527 TAAGATTACTAGG 161539 ||||| || ||| Sbjct 38541 GAAGATAACGAGG 38553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729619297802920