Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1013 141 1e-28 seq1592 138 2e-27 seq197 138 2e-27 seq1072 122 1e-22 seq1038 122 1e-22 seq203 122 1e-22 seq637 100 4e-16 seq2986 96.9 5e-15 seq368 96.9 5e-15 >seq1013 Length=546551 Score = 141 bits (156), Expect = 1e-28 Identities = 311/459 (68%), Gaps = 14/459 (3%) Strand=Plus/Plus Query 163026 AGGGT-TGGTTTTAAAAGATATTAATGGAATATACGAGCCAGGAAAACGTAGATGGCTTA 163084 ||||| |||||||||||||| | || || || || || || |||||| | ||||| | Sbjct 160103 AGGGTCTGGTTTTAAAAGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCATTGGCTCA 160162 Query 163085 AAATAAAGAAAGACTACTTGAACAATGGTTCAATGGCAGACTCTGCAGATTTAGTAGTAC 163144 || | || || |||||||| | | ||| |||||| || |||| |||||||| |||| Sbjct 160163 AAGTTAAAAAGGACTACTTAATGCAAGGTCAAATGGCTGATACTGCTGATTTAGTGGTAC 160222 Query 163145 TTGGGGCATATTATGGAAAAGGAATAAAGGGTGGAATGATGGCTGTCTTTTTGATGGGTT 163204 ||||||| |||||||| | || | || ||||| |||||| |||| || | |||||| Sbjct 160223 TTGGGGCTTATTATGGTACCGGTAGCAAAGGTGGCATGATGTCTGTGTTCCTAATGGGTG 160282 Query 163205 GCTATGATGACGAGTCTGGTAAATGGAAGACAGTAACTAAATGTT----CCGGACACGAT 163260 |||||||| | | || ||| || || ||| || ||| ||||| ||| Sbjct 160283 TGTATGATGATAAAGCATCCAAGTGGTGCACTGTTACT-AAGGTTGGAAATGGACATGAT 160341 Query 163261 GATAATACGTT--AAGGGTTCTACAAGACCAATTAAAGATGATTAAAATTAGTAAGGATC 163318 ||| | || || || | ||| | ||| | || ||| | ||||| || |||||| Sbjct 160342 GATGAAACTTTAGAAAAAATTAACA--AACAACTGAAAATGGTGAAAATCAGCAAGGATG 160399 Query 163319 CaaaaaaaGTACCAGAGTGGTTGGTAGTT--AATAAAATCTATATTCCAGATTTTGTAGC 163376 ||| ||||| ||| ||| | || || |||| || | || | |||||||| || | Sbjct 160400 TAAATAAAGTCCCAACATGGCT--TAATTTAAATAGAAACCATGTCCCAGATTTAGTGGT 160457 Query 163377 AGAGGATCCAAAACAATCTCCTATCTGGGAAATTTCAGGAGCTGAGTTTACTTCATCCAA 163436 | ||||| || || ||| | ||||| ||| | ||| | ||||| || || | Sbjct 160458 TGCTGATCCGAAGTCCTCGCCTGTTTGGGAGATTACTGGAACCGAGTTCACAAAGTCAGA 160517 Query 163437 ATCTCATACAGCAAATGGAATATCCATTAGATTTCCTAG 163475 ||||| || || ||| || || || || ||||| || Sbjct 160518 CTCTCACACTGCGGGTGGGATTTCAATCAGGTTTCCAAG 160556 >seq1592 Length=1045015 Score = 138 bits (152), Expect = 2e-27 Identities = 311/464 (67%), Gaps = 9/464 (2%) Strand=Plus/Plus Query 163024 GAAGGGTTGGTTTTAAAAGATATTAATGGAATATACGAGCCAGGAAAACGTAGATGGCTT 163083 |||||| |||||||||||||| | || || || || || || |||||| | ||||| Sbjct 681962 GAAGGGCTGGTTTTAAAAGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCACTGGCTC 682021 Query 163084 AAAATAAAGAAAGACTACTTGAACAATGGTTCAATGGCAGACTCTGCAGATTTAGTAGTA 163143 ||| | || || |||||||| | | || |||||| || |||| |||||||| ||| Sbjct 682022 AAAGTTAAAAAGGACTACTTAATGCAAGGCCAAATGGCTGATACTGCTGATTTAGTGGTA 682081 Query 163144 CTTGGGGCATATTATGGAAAAGGAATAAAGGGTGGAATGATGGCTGTCTTTTTGATGGGT 163203 |||||||| |||||||| | || | || ||||| |||||| |||| || | |||||| Sbjct 682082 CTTGGGGCTTATTATGGTACCGGTAGCAAAGGTGGCATGATGTCTGTGTTCCTAATGGGT 682141 Query 163204 TGCTATGATGACGAGTCTGGTAAATGGAAGACAGTAACTAAATGTT----CCGGACACGA 163259 |||||||| || | | | ||| || || ||| || ||| ||||| || Sbjct 682142 GTGTATGATGATAAGGCATCTCAGTGGTGCACTGTTACT-AAGGTTGGAAATGGACATGA 682200 Query 163260 TGATAATACGTT--AAGGGTTCTACAAGACCAATTAAAGATGATTAAAATTAGTAAGGAT 163317 |||| | || || || | ||| | ||| | || ||| | ||||| || |||||| Sbjct 682201 TGATGAAACTTTAGAAAAAATTAACA--AACAACTGAAAATGGTGAAAATCAGCAAGGAT 682258 Query 163318 CCaaaaaaaGTACCAGAGTGGTTGGTAGTTAATAAAATCTATATTCCAGATTTTGTAGCA 163377 ||| ||||| ||| ||| | | |||| || | || | |||||||| || | Sbjct 682259 GTAAATAAAGTCCCAACATGGCTAAATTTAAATAGAAACCATGTCCCAGATTTAGTGGTG 682318 Query 163378 GAGGATCCAAAACAATCTCCTATCTGGGAAATTTCAGGAGCTGAGTTTACTTCATCCAAA 163437 | ||||| || || ||| | ||||| || | ||| | ||||| || || | Sbjct 682319 GCTGATCCGAAGTCCTCGCCTGTTTGGGAGATCACTGGAACCGAGTTCACAAAGTCAGAC 682378 Query 163438 TCTCATACAGCAAATGGAATATCCATTAGATTTCCTAGATTTAC 163481 ||||| || || ||| || || || | ||||| || |||| Sbjct 682379 TCTCACACTGCGGGTGGGATTTCAATCCGGTTTCCAAGGGTTAC 682422 >seq197 Length=433710 Score = 138 bits (152), Expect = 2e-27 Identities = 311/464 (67%), Gaps = 9/464 (2%) Strand=Plus/Plus Query 163024 GAAGGGTTGGTTTTAAAAGATATTAATGGAATATACGAGCCAGGAAAACGTAGATGGCTT 163083 |||||| |||||||||||||| | || || || || || || |||||| | ||||| Sbjct 60079 GAAGGGCTGGTTTTAAAAGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCACTGGCTC 60138 Query 163084 AAAATAAAGAAAGACTACTTGAACAATGGTTCAATGGCAGACTCTGCAGATTTAGTAGTA 163143 ||| | || || |||||||| | | || |||||| || |||| |||||||| ||| Sbjct 60139 AAAGTTAAAAAGGACTACTTAATGCAAGGCCAAATGGCTGATACTGCTGATTTAGTGGTA 60198 Query 163144 CTTGGGGCATATTATGGAAAAGGAATAAAGGGTGGAATGATGGCTGTCTTTTTGATGGGT 163203 |||||||| |||||||| | || | || ||||| |||||| |||| || | |||||| Sbjct 60199 CTTGGGGCTTATTATGGTACCGGTAGCAAAGGTGGCATGATGTCTGTGTTCCTAATGGGT 60258 Query 163204 TGCTATGATGACGAGTCTGGTAAATGGAAGACAGTAACTAAATGTT----CCGGACACGA 163259 |||||||| || | | | ||| || || ||| || ||| ||||| || Sbjct 60259 GTGTATGATGATAAGGCATCTCAGTGGTGCACTGTTACT-AAGGTTGGAAATGGACATGA 60317 Query 163260 TGATAATACGTT--AAGGGTTCTACAAGACCAATTAAAGATGATTAAAATTAGTAAGGAT 163317 |||| | || || || | ||| | ||| | || ||| | ||||| || |||||| Sbjct 60318 TGATGAAACTTTAGAAAAAATTAACA--AACAACTGAAAATGGTGAAAATCAGCAAGGAT 60375 Query 163318 CCaaaaaaaGTACCAGAGTGGTTGGTAGTTAATAAAATCTATATTCCAGATTTTGTAGCA 163377 ||| ||||| ||| ||| | | |||| || | || | |||||||| || | Sbjct 60376 GTAAATAAAGTCCCAACATGGCTAAATTTAAATAGAAACCATGTCCCAGATTTAGTGGTG 60435 Query 163378 GAGGATCCAAAACAATCTCCTATCTGGGAAATTTCAGGAGCTGAGTTTACTTCATCCAAA 163437 | ||||| || || ||| | ||||| || | ||| | ||||| || || | Sbjct 60436 GCTGATCCGAAGTCCTCGCCTGTTTGGGAGATCACTGGAACCGAGTTCACAAAGTCAGAC 60495 Query 163438 TCTCATACAGCAAATGGAATATCCATTAGATTTCCTAGATTTAC 163481 ||||| || || ||| || || || | ||||| || |||| Sbjct 60496 TCTCACACTGCGGGTGGGATTTCAATCCGGTTTCCAAGGGTTAC 60539 >seq1072 Length=3228912 Score = 122 bits (134), Expect = 1e-22 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||||||||||| ||||| | ||||| |||||||| || |||||||| | ||| Sbjct 2898256 TGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATTGAT 2898315 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 || ||||||||||| ||||||||||| |||||||||||||| || || | | | ||| Sbjct 2898316 TCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTATGAGAAGACTG 2898375 Query 68839 TTTCTAAGACCATGT 68853 || || | ||||||| Sbjct 2898376 TTCCTGATACCATGT 2898390 >seq1038 Length=472731 Score = 122 bits (134), Expect = 1e-22 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||||||||||| ||||| | ||||| |||||||| || |||||||| | ||| Sbjct 78628 TGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATTGAT 78687 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 || ||||||||||| ||||||||||| |||||||||||||| || || | | | ||| Sbjct 78688 TCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTATGAGAAGACTG 78747 Query 68839 TTTCTAAGACCATGT 68853 || || | ||||||| Sbjct 78748 TTCCTGATACCATGT 78762 >seq203 Length=1902415 Score = 122 bits (134), Expect = 1e-22 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||||||||||| ||||| | ||||| |||||||| || |||||||| | ||| Sbjct 1535334 TGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATTGAT 1535393 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 || ||||||||||| ||||||||||| |||||||||||||| || || | | | ||| Sbjct 1535394 TCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTATGAGAAGACTG 1535453 Query 68839 TTTCTAAGACCATGT 68853 || || | ||||||| Sbjct 1535454 TTCCTGATACCATGT 1535468 >seq637 Length=333953 Score = 100 bits (110), Expect = 4e-16 Identities = 157/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | ||| || || || || | |||||||| || || || || | Sbjct 27916 CCTCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAGCCCTCGTTTCT 27975 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| || ||||||||||| || ||| || ||||| || || || | ||||||| Sbjct 27976 TTAACCAGAAAATGGCAGCAAATGACCCACTGAAAAAGATCCCCTCCACAGAGGCAAATG 28035 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GTATCCACTTCTGTGCCCAATCAG 39815 | | | || || | || || || || | ||||||||| | ||||| || | Sbjct 28036 CGATTATTCGTTCAGCATACAGTGCGTCCTTGTCTGATATCCACTTGAGAGCCCACTCTG 28095 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 | |||||| ||||| |||| ||||| || ||||| || ||| Sbjct 28096 CCTTCTTCCGCACACATGGCAAGGTTTCGATGGCATTGAAAAGA 28139 >seq2986 Length=361983 Score = 96.9 bits (106), Expect = 5e-15 Identities = 156/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | ||| || || || || | |||||||| | || || || | Sbjct 208741 CCTCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCT 208800 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| || ||||||||||| || ||| || ||||| || || || | ||||||| Sbjct 208801 TTAACCAGAAAATGGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATG 208860 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GTATCCACTTCTGTGCCCAATCAG 39815 | | | || || | || || || || | ||||||||| | ||||| || | Sbjct 208861 CGATTATTCGTTCAGCATACAGTGCGTCCTTGTCTGATATCCACTTGAGCGCCCACTCTG 208920 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 | |||||| ||||| |||| ||||| || ||||| || ||| Sbjct 208921 CCTTCTTCCGCACACATGGCAAGGTTTCGATGGCATTGAAAAGA 208964 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCT---TGTGACATAACTCCCATTT 39326 |||||||||| |||||| | || | |||||||| | || |||||| || || Sbjct 208073 TTTAAAAGTCTGCATCTAGTGTGAATTTCATATCTTCTGCTTTTGCCATAACACCGGCTT 208132 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 |||||||||| || || || || || || || || || |||||||||| ||| || | Sbjct 208133 TTTGGTATTCGCCCACACGCTTTTCAAAGAAGTTGGTCTTGCCTTCCAGTGAGATGAGCT 208192 Query 39387 CCATGAAATCAAACGGATT 39405 ||||||| ||||||||||| Sbjct 208193 CCATGAAGTCAAACGGATT 208211 >seq368 Length=471785 Score = 96.9 bits (106), Expect = 5e-15 Identities = 156/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | ||| || || || || | |||||||| | || || || | Sbjct 208548 CCTCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCT 208607 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| || ||||||||||| || ||| || ||||| || || || | ||||||| Sbjct 208608 TTAACCAGAAAATGGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATG 208667 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GTATCCACTTCTGTGCCCAATCAG 39815 | | | || || | || || || || | ||||||||| | ||||| || | Sbjct 208668 CGATTATTCGTTCAGCATACAGTGCGTCCTTGTCTGATATCCACTTGAGCGCCCACTCTG 208727 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 | |||||| ||||| |||| ||||| || ||||| || ||| Sbjct 208728 CCTTCTTCCGCACACATGGCAAGGTTTCGATGGCATTGAAAAGA 208771 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCT---TGTGACATAACTCCCATTT 39326 |||||||||| |||||| | || | |||||||| | || |||||| || || Sbjct 207880 TTTAAAAGTCTGCATCTAGTGTGAATTTCATATCTTCTGCTTTTGCCATAACACCGGCTT 207939 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 |||||||||| || || || || || || || || || |||||||||| ||| || | Sbjct 207940 TTTGGTATTCGCCCACACGCTTTTCAAAGAAGTTGGTCTTGCCTTCCAGTGAGATGAGCT 207999 Query 39387 CCATGAAATCAAACGGATT 39405 ||||||| ||||||||||| Sbjct 208000 CCATGAAGTCAAACGGATT 208018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686616786482760