Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2986 95.1 1e-14 seq368 95.1 1e-14 seq637 91.5 1e-13 >seq2986 Length=361983 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 44126 GAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG--GATCGTTTGCGG 44183 |||||| | |||| ||||| |||||| || || || |||||| | || ||||| | Sbjct 208873 GAACGAATAATCGCATTTGCCTCTGTGGAGGGGATCTT--TTTCAGTGGTTCATTTGCTG 208816 Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243 |||| || ||||||||||||||||| ||||||||||| || || || || ||||| | | Sbjct 208815 CCATTTTCTGGTTAAAGAAACGAGGGTTGATGCCTGGCTTAACTTTCTCCAATGAACTCA 208756 Query 44244 TAAGTCGTGATGA 44256 | ||| | ||||| Sbjct 208755 TCAGTAGAGATGA 208743 >seq368 Length=471785 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 44126 GAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG--GATCGTTTGCGG 44183 |||||| | |||| ||||| |||||| || || || |||||| | || ||||| | Sbjct 208680 GAACGAATAATCGCATTTGCCTCTGTGGAGGGGATCTT--TTTCAGTGGTTCATTTGCTG 208623 Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243 |||| || ||||||||||||||||| ||||||||||| || || || || ||||| | | Sbjct 208622 CCATTTTCTGGTTAAAGAAACGAGGGTTGATGCCTGGCTTAACTTTCTCCAATGAACTCA 208563 Query 44244 TAAGTCGTGATGA 44256 | ||| | ||||| Sbjct 208562 TCAGTAGAGATGA 208550 >seq637 Length=333953 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/133 (76%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 44126 GAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG--GATCGTTTGCGG 44183 |||||| | |||| ||||| |||||| || || || |||||| | || ||||| | Sbjct 28048 GAACGAATAATCGCATTTGCCTCTGTGGAGGGGATCTT--TTTCAGTGGGTCATTTGCTG 27991 Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243 |||| || ||||||||||||||||| |||||||||| || || || || ||||| | | Sbjct 27990 CCATTTTCTGGTTAAAGAAACGAGGGCTGATGCCTGGCTTAACTTTCTCCAATGAACTCA 27931 Query 44244 TAAGTCGTGATGA 44256 | ||| | ||||| Sbjct 27930 TCAGTAGAGATGA 27918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397291260574045