Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq23839 271 3e-68 seq18223 190 8e-44 seq19771 167 9e-37 seq1193 161 4e-35 seq375 161 4e-35 seq23708 136 1e-27 seq13350 129 2e-25 seq8988 129 2e-25 seq1072 118 4e-22 seq19903 98.7 4e-16 seq24033 96.9 1e-15 seq30073 89.7 2e-13 seq20190 89.7 2e-13 >seq23839 Length=1104 Score = 271 bits (300), Expect = 3e-68 Identities = 189/215 (88%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22123 aaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 22182 |||||| ||||| |||||||||| | ||| |||| |||||||||||| |||||||||| Sbjct 890 AATTACTCCCCGTCCTGCCACTCTGCACAGGACTGATGTAATTCATTATTCATTCTGCCG 949 Query 22183 ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG 22242 |||||||| ||||||| ||||| ||||| |||||||||||||| ||| |||| ||||||| Sbjct 950 ACATGGAATCCATCACCAACGGTATGATTAACCTGAATCGCCAACGGTATCAACACCTTG 1009 Query 22243 TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTG 22302 ||||||||| ||||||||| |||||||| || ||||||||| || || |||||||||||| Sbjct 1010 TCGCCTTGCCTATAATATTAGCCCATGGCGAGAACGGGGGCTAATAAATTGTCCATATTG 1069 Query 22303 GCCACGTTTAAATCAAAACTGGTGAAACTCACCCA 22337 |||||| |||||||| |||||||||||||||||| Sbjct 1070 GCCACGGTTAAATCACTACTGGTGAAACTCACCCA 1104 >seq18223 Length=1079 Score = 190 bits (210), Expect = 8e-44 Identities = 132/150 (88%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 22125 TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGAC 22184 |||| |||||||||| |||||||| ||| | || || |||||||||| |||||||||| | Sbjct 928 TTACTCCCCGCCCTGACACTCATCCCAGGAATGATGGAATTCATTAACCATTCTGCCGGC 987 Query 22185 ATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTC 22244 ||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||| Sbjct 988 ATGGAAGCCATCACATACGGTGTGATGAACCTGAATCGTCAGCGGAATCAGCACCTTGTC 1047 Query 22245 GCCTTGCGTATAATATTTGCCCATGGTGAA 22274 | ||||||||| |||| ||||||||| ||| Sbjct 1048 GTCTTGCGTATCATATCTGCCCATGGAGAA 1077 >seq19771 Length=800 Score = 167 bits (184), Expect = 9e-37 Identities = 110/122 (90%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 22123 aaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 22182 |||||| |||| |||||||||||||| ||| |||| ||||||||||||| |||||||||| Sbjct 678 AATTACTCCCCACCCTGCCACTCATCCCAGGACTGGTGTAATTCATTAAACATTCTGCCG 737 Query 22183 ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG 22242 |||||||||||||| ||||||||||||||||||||||| ||||| | |||| ||||||| Sbjct 738 ACATGGAAGCCATCGAAAACGGCATGATGAACCTGAATCTCCAGCAGTATCAACACCTTG 797 Query 22243 TC 22244 || Sbjct 798 TC 799 >seq1193 Length=84152 Score = 161 bits (178), Expect = 4e-35 Identities = 129/154 (84%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 22119 aaaaaaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCT 22178 ||| |||||| ||||| |||||||||||||| | | ||| | |||||||||| ||||| Sbjct 42408 AAACAATTACACCCCGTCCTGCCACTCATCGGAATGCTGCAGCAATTCATTAATGATTCT 42349 Query 22179 GCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCAC 22238 |||||| |||| ||| || | |||| | ||||||||||| |||||||||||| ||| ||| Sbjct 42348 GCCGACCTGGAGGCCCTCCCGAACGACTTGATGAACCTGTATCGCCAGCGGCGTCAACAC 42289 Query 22239 CTTGTCGCCTTGCGTATAATATTTGCCCATGGTG 22272 |||| ||||||| | | ||||||||||||||||| Sbjct 42288 CTTGCCGCCTTGGGGA-AATATTTGCCCATGGTG 42256 >seq375 Length=114631 Score = 161 bits (178), Expect = 4e-35 Identities = 129/154 (84%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 22119 aaaaaaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCT 22178 ||| |||||| ||||| |||||||||||||| | | ||| | |||||||||| ||||| Sbjct 72887 AAACAATTACACCCCGTCCTGCCACTCATCGGAATGCTGCAGCAATTCATTAATGATTCT 72828 Query 22179 GCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCAC 22238 |||||| |||| ||| || | |||| | ||||||||||| |||||||||||| ||| ||| Sbjct 72827 GCCGACCTGGAGGCCCTCCCGAACGACTTGATGAACCTGTATCGCCAGCGGCGTCAACAC 72768 Query 22239 CTTGTCGCCTTGCGTATAATATTTGCCCATGGTG 22272 |||| ||||||| | | ||||||||||||||||| Sbjct 72767 CTTGCCGCCTTGGGGA-AATATTTGCCCATGGTG 72735 >seq23708 Length=869 Score = 136 bits (150), Expect = 1e-27 Identities = 110/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 22125 TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGAC 22184 |||| |||| ||| |||||||||| | ||||| ||||||| | |||||||||||| Sbjct 135 TTACACCCCTCCCAGCCACTCATCTAATTACTGCCCACATTCATTGATCATTCTGCCGAC 76 Query 22185 ATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTC 22244 |||||| || || || |||| |||||||||||||||| ||||||| |||| ||||||| | Sbjct 75 ATGGAATCCGTCTCAGACGGAATGATGAACCTGAATCCCCAGCGGAATCATCACCTTGAC 16 Query 22245 GCCTTGCGTATAA 22257 |||||||||||| Sbjct 15 TCCTTGCGTATAA 3 >seq13350 Length=1133 Score = 129 bits (142), Expect = 2e-25 Identities = 88/99 (89%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 22123 aaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 22182 ||||||||||||||||||| | |||| ||||||| |||||| |||||| |||||||||| Sbjct 99 AATTACGCCCCGCCCTGCCTGTAATCGTAGTACTGGTGTAATCCATTAAACATTCTGCCG 40 Query 22183 ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATC 22221 |||||| ||||||||||||| | ||||||||||||| || Sbjct 39 ACATGGTAGCCATCACAAACCGTATGATGAACCTGACTC 1 >seq8988 Length=565 Score = 129 bits (142), Expect = 2e-25 Identities = 112/138 (81%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 22123 aaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 22182 ||||||||||| ||||| | |||||| | |||| | | || |||| |||||||||| Sbjct 428 AATTACGCCCCACCCTGGCCCTCATCACCACACTGATACTAGTCTTTAATCATTCTGCCG 487 Query 22183 ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGG-CATCAGCACCTT 22241 |||||||| || || || ||| |||||||||||||||| ||||||| ||||| |||||| Sbjct 488 ACATGGAAACCTTCCCACTCGGAATGATGAACCTGAATCACCAGCGGACATCAACACCTT 547 Query 22242 GTCGCCTTGCGTATAATA 22259 ||| |||||| |||||| Sbjct 548 GTCTCCTTGCCCATAATA 565 >seq1072 Length=3228912 Score = 118 bits (130), Expect = 4e-22 Identities = 85/98 (87%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 22253 TATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTA 22312 |||| |||| |||||||||||||||| ||| |||||||||||| | ||| ||| ||| Sbjct 603161 TATATGATTTTCCCATGGTGAAAACGGAGGCCAAGAAGTTGTCCCTCTTGTGCACTTTTG 603220 Query 22313 AATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAG 22350 |||||||||||| ||||||||||| ||||||||||||| Sbjct 603221 AATCAAAACTGGGGAAACTCACCCCGGGATTGGCTGAG 603258 >seq19903 Length=704 Score = 98.7 bits (108), Expect = 4e-16 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 22123 aaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 22182 |||||||||| | ||||||||||| || |||||| | | || ||||| |||||||||| Sbjct 97 AATTACGCCCACCTCTGCCACTCATGTCACTACTGTGGAATTTTATTAAACATTCTGCCG 38 Query 22183 ACATGGAAGCCATCACAAACGGCATGATGAACCTGAA 22219 |||||||| | ||| ||||||||||||||||||| Sbjct 37 ACATGGAACCGCTCAACTACGGCATGATGAACCTGAA 1 >seq24033 Length=1093 Score = 96.9 bits (106), Expect = 1e-15 Identities = 83/100 (83%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 22123 aaTTACGCCC-CGC-CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGC 22180 |||||||||| | | |||| || ||||| ||||||| ||||||||||| || || Sbjct 100 AATTACGCCCACACTCCTGACAATCATCCATGTACTGTACATATTCATTAAGCGTTATGA 41 Query 22181 CGACATGGAAGCCATCACAAACGGCATGATGAACCTGAAT 22220 |||||||||| ||||||||||||| ||||||||||||||| Sbjct 40 CGACATGGAATCCATCACAAACGGTATGATGAACCTGAAT 1 >seq30073 Length=566 Score = 89.7 bits (98), Expect = 2e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 22122 aaaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC 22181 ||| |||| |||| || | ||||||| | ||||||||| |||||||| |||| | | Sbjct 443 AAAATACGGCCCGGGCTCACCCTCATCGAAATACTGTTGTGGTTCATTAACCATTATATC 502 Query 22182 GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCA 22225 ||||| ||||||||| ||| ||||||||||||||| ||||| Sbjct 503 CGCATGGTAGCCATCACCCACGACATGATGAACCTGAACCGCCA 546 >seq20190 Length=874 Score = 89.7 bits (98), Expect = 2e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 22123 aaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 22182 ||| |||||||||||||||||||||| ||| || |||||||||| ||| |||||||||| Sbjct 808 AATAACGCCCCGCCCTGCCACTCATCTCAGCACAGTTGTAATTCGTTACACATTCTGCCG 867 Query 22183 ACATGGA 22189 ||||||| Sbjct 868 ACATGGA 874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184370310699462