Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1072 89.7 6e-13 seq1038 89.7 6e-13 seq203 89.7 6e-13 >seq1072 Length=3228912 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 110698 TCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTG 110757 |||||| ||| || || ||||||||||||||| |||| ||||| |||| |||||| Sbjct 2898276 TCTTCTGGTGTATATATTACTTGTGTATGGTTCAATTGATTCGTTATTTCCCAGGATTTG 2898335 Query 110758 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTT 110799 || ||||| || ||||||||||| || || | ||||||||| Sbjct 2898336 AGCAGTGGATGCAGTTGGCATTGGAGCTATGAGAAGACTGTT 2898377 Score = 89.7 bits (98), Expect = 6e-13 Identities = 119/164 (73%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| | |||||||||| | ||||| || || | ||| ||||||||||||||||| Sbjct 2900802 CTCATCAGGAGCTGTGTACTCGACGATTTCCGTGCACAGGTTCGAACTCTTAATCGTCCC 2900861 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || ||| | ||| || || |||| ||||| || || || |||||||| || || || Sbjct 2900862 CAGATTTTGTTGATTTGATTTTCTGTTACACGCGTCTTTATATAGCATGTACGGTGTGCC 2900921 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCG 111427 || || |||||| | || | ||| | ||| ||| || ||| Sbjct 2900922 GGTTTCGATCTGTGCCTCGATCACAGCGTACCATAACTTCTGCG 2900965 >seq1038 Length=472731 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 110698 TCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTG 110757 |||||| ||| || || ||||||||||||||| |||| ||||| |||| |||||| Sbjct 78648 TCTTCTGGTGTATATATTACTTGTGTATGGTTCAATTGATTCGTTATTTCCCAGGATTTG 78707 Query 110758 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTT 110799 || ||||| || ||||||||||| || || | ||||||||| Sbjct 78708 AGCAGTGGATGCAGTTGGCATTGGAGCTATGAGAAGACTGTT 78749 Score = 89.7 bits (98), Expect = 6e-13 Identities = 119/164 (73%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| | |||||||||| | ||||| || || | ||| ||||||||||||||||| Sbjct 80325 CTCATCTGGAGCTGTGTACTCAACGATTTCCGTGCACAGGTTCGAACTCTTAATCGTCCC 80384 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 | ||| | ||| || || |||| ||||| || || || ||||||||||| || || Sbjct 80385 AAGATTTTGTTGATTTGATTTTCTGTTACACGCGTCTTTATAAAGCATGTAGGGTGTGCC 80444 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCG 111427 || || |||||| | || | ||| | ||| ||| || ||| Sbjct 80445 GGTTTCGATCTGTGCCTCGATCACAGCGTACCATAACTTCTGCG 80488 >seq203 Length=1902415 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 110698 TCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTG 110757 |||||| ||| || || ||||||||||||||| |||| ||||| |||| |||||| Sbjct 1535354 TCTTCTGGTGTATATATTACTTGTGTATGGTTCAATTGATTCGTTATTTCCCAGGATTTG 1535413 Query 110758 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTT 110799 || ||||| || ||||||||||| || || | ||||||||| Sbjct 1535414 AGCAGTGGATGCAGTTGGCATTGGAGCTATGAGAAGACTGTT 1535455 Score = 89.7 bits (98), Expect = 6e-13 Identities = 119/164 (73%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| | |||||||||| | ||||| || || | ||| ||||||||||||||||| Sbjct 1537031 CTCATCTGGAGCTGTGTACTCAACGATTTCCGTGCACAGGTTCGAACTCTTAATCGTCCC 1537090 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 | ||| | ||| || || |||| ||||| || || || ||||||||||| || || Sbjct 1537091 AAGATTTTGTTGATTTGATTTTCTGTTACACGCGTCTTTATAAAGCATGTAGGGTGTGCC 1537150 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCG 111427 || || |||||| | || | ||| | ||| ||| || ||| Sbjct 1537151 GGTTTCGATCTGTGCCTCGATCACAGCGTACCATAACTTCTGCG 1537194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627765015746400