Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1072 86.0 7e-12 seq1038 86.0 7e-12 seq203 86.0 7e-12 seq938 84.2 3e-11 >seq1072 Length=3228912 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 105506 AACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 105565 |||||||| ||||| |||||||||||||| || ||||| || |||||| |||| ||||| Sbjct 2898377 AACAGTCTTCTCATAGCTCCAATGCCAACTGCATCCACTGCTCAAATCCTGGGAAATAAC 2898318 Query 105566 GAATGCTTTGAACCCTACAC 105585 |||| ||||||| ||||| Sbjct 2898317 GAATCAATTGAACCATACAC 2898298 >seq1038 Length=472731 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 105506 AACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 105565 |||||||| ||||| |||||||||||||| || ||||| || |||||| |||| ||||| Sbjct 78749 AACAGTCTTCTCATAGCTCCAATGCCAACTGCATCCACTGCTCAAATCCTGGGAAATAAC 78690 Query 105566 GAATGCTTTGAACCCTACAC 105585 |||| ||||||| ||||| Sbjct 78689 GAATCAATTGAACCATACAC 78670 >seq203 Length=1902415 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 105506 AACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 105565 |||||||| ||||| |||||||||||||| || ||||| || |||||| |||| ||||| Sbjct 1535455 AACAGTCTTCTCATAGCTCCAATGCCAACTGCATCCACTGCTCAAATCCTGGGAAATAAC 1535396 Query 105566 GAATGCTTTGAACCCTACAC 105585 |||| ||||||| ||||| Sbjct 1535395 GAATCAATTGAACCATACAC 1535376 >seq938 Length=1152182 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 169325 GAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGA 169384 || ||||| ||||||||| | || ||||| || ||||| || || || | ||| ||| Sbjct 264183 GATGCATCTCGAACATTCAGAAGTTTACCACGCAGGGGGAACACCCCATATTTATCCCGA 264242 Query 169385 CCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATG 169444 || || || |||||||| | || || | ||| || || || || |||||||| | ||| Sbjct 264243 CCCACAACCGAGAGACCTGATACCGCCAAAGTTTTGGCAGAATCCCCCTCGGTCAATATG 264302 Query 169445 AGCGTACATTTTCCA--GATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAA 169502 || || || | ||| || || || || || | ||||||||||||| || |||| Sbjct 264303 AGGGTGCAAT--CCATGGAATGCTTGGTGCCAGCATCATTCGCATCATCCAGCTTCGGAA 264360 Query 169503 TACC 169506 ||| Sbjct 264361 CACC 264364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583012848543160