Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2986 87.8 2e-12 seq368 87.8 2e-12 >seq2986 Length=361983 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 |||||||| || || | |||||| || || | | ||||||||| | || || ||||| Sbjct 208743 TCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCTTT 208802 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 ||||| || |||||| || ||||||||||| ||||| || || ||| | ||||| ||| Sbjct 208803 AACCAGAAAATGGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATGCG 208862 Query 74892 A 74892 | Sbjct 208863 A 208863 >seq368 Length=471785 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 |||||||| || || | |||||| || || | | ||||||||| | || || ||||| Sbjct 208550 TCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCTTT 208609 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 ||||| || |||||| || ||||||||||| ||||| || || ||| | ||||| ||| Sbjct 208610 AACCAGAAAATGGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATGCG 208669 Query 74892 A 74892 | Sbjct 208670 A 208670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546983371638200