Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1072 113 5e-20 seq1038 95.1 1e-14 seq203 95.1 1e-14 seq737 87.8 2e-12 seq185 87.8 2e-12 seq460 84.2 2e-11 seq1607 82.4 9e-11 seq498 82.4 9e-11 seq200 82.4 9e-11 >seq1072 Length=3228912 Score = 113 bits (124), Expect = 5e-20 Identities = 128/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 80929 ACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTA 80988 ||||| |||| | |||| ||||||||||||||||||||| || ||| |||||| || Sbjct 2900800 ACCTCATCAGGAGCTGTGTACTCGACGATTTCCGTGCACAGGTTCGAACTCTTAATCGTC 2900859 Query 80989 CCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTA 81048 ||||| |||| || ||||| || ||| || ||||| || || ||||||||| || Sbjct 2900860 CCCAGATTTTGTTGATTTGATTTTCTGTTACACGCGTCTTTATATAGCATGTACGGTGTG 2900919 Query 81049 CCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGA 81100 ||||| |||| ||||| || || | |||| ||| | || |||| |||| Sbjct 2900920 CCGGTTTCGATCTGTGCCTCGATCACAGCGTACCATAACTTCTGCGCTTTGA 2900971 >seq1038 Length=472731 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 80929 ACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTA 80988 ||||| || | | |||| |||| |||||||||||||||| || ||| |||||| || Sbjct 80323 ACCTCATCTGGAGCTGTGTACTCAACGATTTCCGTGCACAGGTTCGAACTCTTAATCGTC 80382 Query 80989 CCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTA 81048 || || |||| || ||||| || ||| || ||||| || || |||||| || || Sbjct 80383 CCAAGATTTTGTTGATTTGATTTTCTGTTACACGCGTCTTTATAAAGCATGTAGGGTGTG 80442 Query 81049 CCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGA 81100 ||||| |||| ||||| || || | |||| ||| | || |||| |||| Sbjct 80443 CCGGTTTCGATCTGTGCCTCGATCACAGCGTACCATAACTTCTGCGCTTTGA 80494 >seq203 Length=1902415 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 80929 ACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTA 80988 ||||| || | | |||| |||| |||||||||||||||| || ||| |||||| || Sbjct 1537029 ACCTCATCTGGAGCTGTGTACTCAACGATTTCCGTGCACAGGTTCGAACTCTTAATCGTC 1537088 Query 80989 CCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTA 81048 || || |||| || ||||| || ||| || ||||| || || |||||| || || Sbjct 1537089 CCAAGATTTTGTTGATTTGATTTTCTGTTACACGCGTCTTTATAAAGCATGTAGGGTGTG 1537148 Query 81049 CCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGA 81100 ||||| |||| ||||| || || | |||| ||| | || |||| |||| Sbjct 1537149 CCGGTTTCGATCTGTGCCTCGATCACAGCGTACCATAACTTCTGCGCTTTGA 1537200 >seq737 Length=1614662 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 5/123 (4%) Strand=Plus/Minus Query 27392 GAAATATTACTATA-----ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTAC 27446 ||||| |||||| | |||||||||||||||||||| |||||||| || ||||| || Sbjct 6137 GAAATTTTACTAGATAAAGATGCAAATCTTTGTCAAGACTCTTACCGGTAAAACTATCAC 6078 Query 27447 TCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGA 27506 |||||||| || | |||||| |||| ||| | ||| || || |||||||| || Sbjct 6077 CCTTGAGGTAGAAGCCTCTGATAGTATTGACAATGTCAAGCAAAAGATCCAGGACAAAGA 6018 Query 27507 GGG 27509 || Sbjct 6017 AGG 6015 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| |||||||| || ||||| || |||||||| || | | Sbjct 31732 ATGCAAATCTTTGTCAAGACTCTTACCGGTAAAACTATCACCCTTGAGGTAGAAGCCTCT 31673 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 ||||| |||| ||| | ||| || || |||||||| || || Sbjct 31672 GATAGTATTGACAATGTCAAGCAAAAGATCCAGGACAAAGAAGG 31629 >seq185 Length=2393798 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 5/123 (4%) Strand=Plus/Minus Query 27392 GAAATATTACTATA-----ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTAC 27446 ||||| |||||| | |||||||||||||||||||| |||||||| || ||||| || Sbjct 409548 GAAATTTTACTAGATAAAGATGCAAATCTTTGTCAAGACTCTTACCGGTAAAACTATCAC 409489 Query 27447 TCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGA 27506 |||||||| || | |||||| |||| ||| | ||| || || |||||||| || Sbjct 409488 CCTTGAGGTAGAAGCCTCTGATAGTATTGACAATGTCAAGCAAAAGATCCAGGACAAAGA 409429 Query 27507 GGG 27509 || Sbjct 409428 AGG 409426 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| |||||||| || ||||| || |||||||| || | | Sbjct 418359 ATGCAAATCTTTGTCAAGACCCTTACCGGTAAAACTATCACACTTGAGGTAGAAGCCTCT 418300 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 ||||| |||| ||| | ||| || || |||||||| || || Sbjct 418299 GATAGTATTGACAATGTCAAGCAAAAGATCCAGGACAAAGAAGG 418256 >seq460 Length=260977 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| |||||||| || ||||| || |||||||| || | | Sbjct 216793 ATGCAAATCTTTGTCAAGACCCTTACCGGTAAAACTATCACACTTGAGGTAGAAGCCTCT 216734 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 ||||| |||| ||| | ||| || || |||||||| || || Sbjct 216733 GATAGTATTGACAATGTCAAGCAAAAGATCCAGGACAAAGAAGG 216690 >seq1607 Length=2233834 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||||||||| || ||||| ||||| || || ||||| || ||||| || |||| || Sbjct 1462905 GGAATTCCTCCCGATCAGCAACGTCTCATCTTCGCTGGAAAACAACTTGAAGATGGCCGC 1462846 Query 27568 ACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCG 27626 || | ||| ||||| || |||| || || ||||||||||| | ||| | |||||| | Sbjct 1462845 ACATTGAGC-GACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 1462787 Query 27627 CGGTGGA 27633 || ||| Sbjct 1462786 AGGAGGA 1462780 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||| ||||| || ||||| ||||| || |||||||| || ||||| || |||| || Sbjct 1463405 GGAATACCTCCCGATCAGCAACGTCTTATCTTTGCTGGAAAACAACTTGAAGATGGCCGC 1463346 Query 27568 ACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCG 27626 || | ||| ||||| || |||| || || ||||||||||| | ||| | |||||| | Sbjct 1463345 ACGTTGAGC-GACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 1463287 Query 27627 CGGTGGA 27633 || ||| Sbjct 1463286 AGGAGGA 1463280 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||| ||||| || ||||| ||||| || |||||||| || ||||| || |||| || Sbjct 1464688 GGAATCCCTCCTGATCAGCAACGTCTCATCTTTGCTGGAAAACAACTTGAAGATGGCCGC 1464629 Query 27568 ACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCG 27626 || | ||| ||||| || |||| || || ||||||||||| | ||| | |||||| | Sbjct 1464628 ACATTGAGC-GACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 1464570 Query 27627 CGGTGGA 27633 || ||| Sbjct 1464569 AGGAGGA 1464563 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||||||||| || ||||| ||||| || || ||||| || ||||| || |||| || Sbjct 1466353 GGAATTCCTCCCGATCAGCAACGTCTCATCTTCGCTGGAAAACAACTTGAAGATGGCCGC 1466294 Query 27568 ACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCG 27626 || | ||| ||||| || |||| || || ||||||||||| | ||| | |||||| | Sbjct 1466293 ACATTGAGC-GACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 1466235 Query 27627 CGGTGGA 27633 || ||| Sbjct 1466234 AGGAGGA 1466228 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||| ||||| || ||||| ||||| || |||||||| || ||||| || |||| || Sbjct 1466853 GGAATCCCTCCCGATCAGCAACGTCTCATCTTTGCTGGAAAACAACTTGAAGATGGCCGC 1466794 Query 27568 ACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCG 27626 || | ||| ||||| || |||| || || ||||||||||| | ||| | |||||| | Sbjct 1466793 ACATTGAGC-GACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 1466735 Query 27627 CGGTGGA 27633 || ||| Sbjct 1466734 AGGAGGA 1466728 >seq498 Length=2034514 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||| ||||| || ||||| ||||| || |||||||| || ||||| || |||| || Sbjct 1867818 GGAATCCCTCCCGATCAGCAACGTCTCATCTTTGCTGGAAAACAACTTGAAGATGGCCGC 1867877 Query 27568 ACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCG 27626 || | ||| ||||| || |||| || || ||||||||||| | ||| | |||||| | Sbjct 1867878 ACATTGAGC-GACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTCCGTCTTAG 1867936 Query 27627 CGGTGGA 27633 || ||| Sbjct 1867937 AGGAGGA 1867943 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||||||||| || ||||| ||||| || || ||||| || ||||| || |||| || Sbjct 1868491 GGAATTCCTCCGGATCAGCAACGTCTCATCTTCGCTGGAAAACAACTTGAAGATGGCCGC 1868550 Query 27568 ACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCG 27626 || | ||| ||||| || |||| || || ||||||||||| | ||| | |||||| | Sbjct 1868551 ACATTGAGC-GACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 1868609 Query 27627 CGGTGGA 27633 || ||| Sbjct 1868610 AGGAGGA 1868616 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||| ||||| || ||||| ||||| || |||||||| || ||||| || |||| || Sbjct 1870899 GGAATCCCTCCCGATCAGCAACGTCTTATCTTTGCTGGAAAACAACTTGAAGATGGCCGC 1870958 Query 27568 ACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCG 27626 || | ||| ||||| || |||| || || ||||||||||| | ||| | |||||| | Sbjct 1870959 ACATTGAGC-GACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 1871017 Query 27627 CGGTGGA 27633 || ||| Sbjct 1871018 AGGAGGA 1871024 >seq200 Length=1515198 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||| ||||| || ||||| ||||| || |||||||| || ||||| || |||| || Sbjct 873740 GGAATCCCTCCCGATCAGCAACGTCTTATCTTTGCTGGAAAACAACTTGAAGATGGCCGC 873681 Query 27568 ACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCG 27626 || | ||| ||||| || |||| || || ||||||||||| | ||| | |||||| | Sbjct 873680 ACATTGAGC-GACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 873622 Query 27627 CGGTGGA 27633 || ||| Sbjct 873621 AGGAGGA 873615 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||||||||| || ||||| ||||| || || ||||| || ||||| || |||| || Sbjct 876148 GGAATTCCTCCGGATCAGCAACGTCTCATCTTCGCTGGAAAACAACTTGAAGATGGCCGC 876089 Query 27568 ACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCG 27626 || | ||| ||||| || |||| || || ||||||||||| | ||| | |||||| | Sbjct 876088 ACATTGAGC-GACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG 876030 Query 27627 CGGTGGA 27633 || ||| Sbjct 876029 AGGAGGA 876023 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||| ||||| || ||||| ||||| || |||||||| || ||||| || |||| || Sbjct 876821 GGAATCCCTCCCGATCAGCAACGTCTCATCTTTGCTGGAAAACAACTTGAAGATGGCCGC 876762 Query 27568 ACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCG 27626 || | ||| ||||| || |||| || || ||||||||||| | ||| | |||||| | Sbjct 876761 ACATTGAGC-GACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTCCGTCTTAG 876703 Query 27627 CGGTGGA 27633 || ||| Sbjct 876702 AGGAGGA 876696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570067953920080