Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_028763.1 Length=49847 Score E Sequences producing significant alignments: (Bits) Value seq27593 95.1 4e-15 >seq27593 Length=741 Score = 95.1 bits (104), Expect = 4e-15 Identities = 156/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 30354 TTTTTATCCCATATCCATTCGTGCCTAAACCATTCAGCATTACTACACATTAAAAAA--- 30410 ||||||| ||| | ||||| ||| ||| | || | | ||||| |||||| ||| Sbjct 70 TTTTTATTCCAAACCCATTGGTGTCTATAATTTTTAACGTTACT---CATTAATAAAGCA 126 Query 30411 CTTGTGAAAGGCTGTGAACAAGTTAAAACAATGGCTCTATTTGGTTTTATTATTCTCTTG 30470 ||||| ||||| ||||||||| || | || |||| ||| |||||||| ||||| || Sbjct 127 CTTGTAAAAGGTTGTGAACAATGTAGTATTATAGCTCCATTCGGTTTTATAATTCTGTTT 186 Query 30471 TATTGTTCCCAAAGTTTGTCAAATGGTATTATTGTGTCCCATTTACAGGCAGTAGTTCCG 30530 ||| ||||| | ||||| || | | ||||||||||| || || || ||| Sbjct 187 AGTTGCTCCCACATCAAATCAAAGTCAATAACACTATCCCATTTACAAGCGGTTGTGCCG 246 Query 30531 TATGGTAAATCACAAAGTATCATATCAATGCTGTTATCTTTAAT 30574 |||||| || || ||| |||||||| ||||||| ||| Sbjct 247 TATGGTGGGTCTGTAATTATAGCGTCAATGCTATTATCTTCAAT 290 Score = 84.2 bits (92), Expect = 7e-12 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38620 TTTTTTCCCAAATCCATTCATATTTAAAAAGTTTAGGGTTACTCATTACTAAAGCACTTG 38679 |||| | ||||| ||||| | | || || |||| ||||||||||| ||||||||||| Sbjct 71 TTTTATTCCAAACCCATTGGTGTCTATAATTTTTAACGTTACTCATTAATAAAGCACTTG 130 Query 38680 TAAAAGGTTGTGAAGCAGTTAAAACTATTGCGCCTTTATCTTTAATTAGTTTTTCGTATT 38739 |||||||||||||| | || | ||| || || || ||| || | | | | || Sbjct 131 TAAAAGGTTGTGAACAATGTAGTATTATAGCTCCATTCGGTTTTATAATTCTGTTTAGTT 190 Query 38740 TATCCCAAAGTAAATTAAAAGGTATTACTTCATCCCATTTACAAGCAGTAGTTCCATAAG 38799 ||||| | |||| ||| || || ||||||||||||||| || || || || | Sbjct 191 GCTCCCACATCAAATCAAAGTCAATAACACTATCCCATTTACAAGCGGTTGTGCCGTATG 250 Query 38800 G 38800 | Sbjct 251 G 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159324429737322