Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_028898.1 Length=35764 Score E Sequences producing significant alignments: (Bits) Value seq27241 152 1e-32 seq27354 141 2e-29 seq2235 105 2e-18 >seq27241 Length=1080 Score = 152 bits (168), Expect = 1e-32 Identities = 285/410 (70%), Gaps = 9/410 (2%) Strand=Plus/Minus Query 24394 AAGTGTAGAAGATCAAACCTAATCTGACAGTCCCCCGTTTTAAATTACCGTG-TCTGTCA 24452 ||||||||||| ||| | | |||||||||| ||||||| | | ||| |||||| Sbjct 555 AAGTGTAGAAGTTCAGATTTGATCTGACAGTTTGCCGTTTTT--TGGCGGTGATCTGTCT 498 Query 24453 GATTAATTTGAGCTTAAATTCTTTTCCACCCAAATCCGTTTTCCATCAAGTAAGGTTGCC 24512 | | | ||| | || ||||||| ||| || |||| || || | | ||| | Sbjct 497 GGTCAGTTTTGGTCTATGAACTTTTCCTTCCAGATTTGTTTCCCTTCGATCATGGTCTCG 438 Query 24513 ATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATG-GTGATTATAATACAT 24571 | |||||||| || || ||||||||||| ||||| || || || ||| || || | Sbjct 437 AAGGGTGTTCTTCCGCAACACATTTTTCCCTGATGGGTGCGTTGCGTG-TTGTAGTGATG 379 Query 24572 TAACCACTCATCTAAATCCGCTTGTA-ATG-TCGTTAAATCCGTATAAATTTTCTTCCTA 24629 |||||| ||||| | ||| || |||| || ||| | | ||| | ||||| | | Sbjct 378 TAACCATTCATCCAGATCAGCCTGTAGCTGCTCGATGGTT--TGATACAGGTTCTTTCGA 321 Query 24630 AATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATGCCGTTA 24689 || ||||| || || ||||| || | || ||||| ||||| || || || |||||||| Sbjct 320 AACGCCACCTGATAGAATTCCTGCAGAATGGTTTTGTGGAAACGCTCACAAATGCCGTTT 261 Query 24690 GTCTGCGGATGTTTTACCTTGGTTTTACTGTGTTCAATATCATTTATTGCTAAATAAAGC 24749 ||||| || || |||||||| | |||| |||||||| || || || | | || Sbjct 260 GTCTGGGGCGACTTAACCTTGGTCCTGGTGTGATCAATATCGTTGATGGCCAGGAACAGT 201 Query 24750 TCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGT 24799 | ||||||||| || || | |||| ||||||||| |||| ||||| || Sbjct 200 TGATAATCGTGTTTGTCGGGCCTGCCGCAATATTCAGTTCCCCGGTCTGT 151 >seq27354 Length=776 Score = 141 bits (156), Expect = 2e-29 Identities = 234/337 (69%), Gaps = 7/337 (2%) Strand=Plus/Minus Query 25268 AACAGCTTGCTCTATTGCCTCATCAACACGATTTTTTAAGTTGGGAACGCGTCTATTTTG 25327 ||| |||||||||| || |||||||||||| || | |||||| | | | | Sbjct 696 AACCGCTTGCTCTACGGCAGGATCAACACGATTCTTGAGGTTGGGCGCTCTCCGGCTCGT 637 Query 25328 ATTCAGCAATGCTTCAACACCACCTTGCTCAACCGCTTGTTGATAACGATAGAATGTATC 25387 || ||| | |||||||||||| |||||||| || || | || ||||||||||| ||||| Sbjct 636 ATCCAGAAGTGCTTCAACACCGCCTTGCTCTACAGCATCTTTGTAACGATAGAACGTATC 577 Query 25388 TCGGCTCATTCCCATTACTTTGCAGGCTTGAGAAATATTACCCAGTTCTTCTGCTAAATT 25447 || | | |||||| |||||| || || |||||||||| || ||||| || | ||| Sbjct 576 TCTGGGTACACCCATTGTTTTGCAAGCATGGGAAATATTACTAAGCTCTTCAGCCAGATT 517 Query 25448 TAATAAACCGGTCTTGTGTTTAATGAGAGGGTTGTTAGAATAAAACATGAGAGTTTCCTT 25507 | || || ||||||| ||||| | | | || || || |||||| ||| |||| Sbjct 516 AAGCAATCCAACTTTGTGTTAAATGATTCGTTGATGAGTATGAATCATGAGGGTTACCTT 457 Query 25508 TTT----GTTTAGATTGATTTTTGACACTCATATTCTAAACGGGAAAC---TCTCACTTT 25560 ||| |||||||| || | | | | ||||||| || ||| ||||| ||| Sbjct 456 TTTTGTGATTTAGATTTTGGTTAATCGCCCTTTATCTAAACCGGTAACCCTTCTCATTTT 397 Query 25561 TTAGAGTGAATTGTCAGATCAAGTCTGATCTTCTACA 25597 | | ||| |||| | ||| |||||| || ||||| Sbjct 396 TGAAGATGATATGTCTGGTCAGGTCTGAACTACTACA 360 >seq2235 Length=97012 Score = 105 bits (116), Expect = 2e-18 Identities = 183/266 (69%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 24639 TGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATGCCGTTAGTCTGCGGA 24698 || || || || || | ||||| || || ||||| ||||| ||||||| || || ||| Sbjct 17028 TGATAGAACTCCTGCAGAATTGTCTTGTGAAACCGCTCGCATGTGCCGTTGGTTTGTGGA 16969 Query 24699 TGTTTTACCTTGGTTTTACTGTGTTCAATATCATTTATTGCTAAATAAAGCTCATAATCG 24758 ||||| ||||||||||| |||| |||||||| || |||| | | |||| ||| || Sbjct 16968 TGTTTGACCTTGGTTTTGGTGTGGTCAATATCGTTGATTGTCATGAAGAGCTGATAGTCA 16909 Query 24759 TGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGTAACATCGGT 24818 || || ||| | |||| || | ||||| || ||||| || | || || | || ||| Sbjct 16908 TGCTTGTCTGGCCTGCCGCAGAACTCACTGCCCCGGTCTGTCCAAATACGCAGCACCGGA 16849 Query 24819 AAACCTTGGCTTTCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAGCACTGATA 24878 | | | || || | | || ||||| ||||| |||| |||||| || | || Sbjct 16848 AGATCGTGTTCCTCGTAAAACGGCAACACCCGGTCATTGAGCACATCCGCGGCGGTAATC 16789 Query 24879 GCGGTCTTCATTGTATAAAGTTTTGC 24904 | || || | ||||| ||||| || Sbjct 16788 GGTGTTTTGGTGGTATAGAGTTTAGC 16763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114277029789708