Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_028924.1 Length=48689 Score E Sequences producing significant alignments: (Bits) Value seq27593 129 2e-25 >seq27593 Length=741 Score = 129 bits (142), Expect = 2e-25 Identities = 131/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 29809 TTTTATAATTCTTTCGTATTGTGGCCACAACTTATCAAACTGTATTATACTATCCCATTT 29868 |||||||||||| | ||| ||||| | |||||| | || | |||||||||||| Sbjct 171 TTTTATAATTCTGTTTAGTTGCTCCCACATCAAATCAAAGTCAATAACACTATCCCATTT 230 Query 29869 ACAATCCGTTGTGCCATAAGGTAAATCACAAATAATAGCGTCAATACTTTTATCTTCAAT 29928 |||| | |||||||| || ||| || ||| ||||||||||| || ||||||||||| Sbjct 231 ACAAGCGGTTGTGCCGTATGGTGGGTCTGTAATTATAGCGTCAATGCTATTATCTTCAAT 290 Query 29929 CGTTTTCATTACTTCAAGGCAATCGCCTAATCTTAAATCTATCATTTTATT 29979 ||||||||||| ||||||||||| ||| ||| | ||||||||| || Sbjct 291 AGTTTTCATTACCTCAAGGCAATCTCCTTTAATTAGTTTTATCATTTTGTT 341 Score = 95.1 bits (104), Expect = 4e-15 Identities = 156/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 31858 TTTTTATCCCATATCCATTCGTGCCTAAACCATTCAGCATTACTACACATTAAAAAA--- 31914 ||||||| ||| | ||||| ||| ||| | || | | ||||| |||||| ||| Sbjct 70 TTTTTATTCCAAACCCATTGGTGTCTATAATTTTTAACGTTACT---CATTAATAAAGCA 126 Query 31915 CTTGTGAAAGGCTGTGAACAAGTTAAAACAATGGCTCTATTTGGTTTTATTATTCTCTTG 31974 ||||| ||||| ||||||||| || | || |||| ||| |||||||| ||||| || Sbjct 127 CTTGTAAAAGGTTGTGAACAATGTAGTATTATAGCTCCATTCGGTTTTATAATTCTGTTT 186 Query 31975 TATTGTTCCCAAAGTTTGTCAAATGGTATTATTGTGTCCCATTTACAGGCAGTAGTTCCG 32034 ||| ||||| | ||||| || | | ||||||||||| || || || ||| Sbjct 187 AGTTGCTCCCACATCAAATCAAAGTCAATAACACTATCCCATTTACAAGCGGTTGTGCCG 246 Query 32035 TATGGTAAATCACAAAGTATCATATCAATGCTGTTATCTTTAAT 32078 |||||| || || ||| |||||||| ||||||| ||| Sbjct 247 TATGGTGGGTCTGTAATTATAGCGTCAATGCTATTATCTTCAAT 290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155620326269358