Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_028956.1 Length=52139 Score E Sequences producing significant alignments: (Bits) Value seq27354 141 3e-29 seq27241 129 2e-25 >seq27354 Length=776 Score = 141 bits (156), Expect = 3e-29 Identities = 236/340 (69%), Gaps = 7/340 (2%) Strand=Plus/Minus Query 41535 AACAGCTTGCTCTATTGCCTCATCAACACGATTTTTTAAGTTGGGAACGCGTCTATTTTG 41594 ||| |||||||||| || |||||||||||| || | |||||| | | | | Sbjct 696 AACCGCTTGCTCTACGGCAGGATCAACACGATTCTTGAGGTTGGGCGCTCTCCGGCTCGT 637 Query 41595 ATTCAGCAATGCTTCAACACCACCTTGCTCAACCGCTTGTTGATAACGATAGAATGTATC 41654 || ||| | |||||||||||| |||||||| || || | || ||||||||||| ||||| Sbjct 636 ATCCAGAAGTGCTTCAACACCGCCTTGCTCTACAGCATCTTTGTAACGATAGAACGTATC 577 Query 41655 TCGGCTCATTCCCATTACTTTGCAGGCTTGAGAAATATTACCCAGTTCTTCTGCTAAATT 41714 || | | |||||| |||||| || || |||||||||| || ||||| || | ||| Sbjct 576 TCTGGGTACACCCATTGTTTTGCAAGCATGGGAAATATTACTAAGCTCTTCAGCCAGATT 517 Query 41715 TAATAAACCGGTCTTGTGTTTAATGAGAGGGTTGTTAGAATAAAACATGAGAGTTTCCTT 41774 | || || ||||||| ||||| | | | || || || |||||| ||| |||| Sbjct 516 AAGCAATCCAACTTTGTGTTAAATGATTCGTTGATGAGTATGAATCATGAGGGTTACCTT 457 Query 41775 TTT----GTTTAGATTGATTTTTGACACTCATATTCTAAACGGGAAAC---TCTCACTTT 41827 ||| |||||||| || | | | | ||||||| || ||| ||||| ||| Sbjct 456 TTTTGTGATTTAGATTTTGGTTAATCGCCCTTTATCTAAACCGGTAACCCTTCTCATTTT 397 Query 41828 TTAGAGTGAATTGTCAGATCAAGTCTGATCTTCTACATAT 41867 | | ||| |||| | ||| |||||| || ||||| || Sbjct 396 TGAAGATGATATGTCTGGTCAGGTCTGAACTACTACAGAT 357 >seq27241 Length=1080 Score = 129 bits (142), Expect = 2e-25 Identities = 278/407 (68%), Gaps = 9/407 (2%) Strand=Plus/Minus Query 40664 TGTAGAAGATCAAACCTAATCTGACAGTCCCCCGTTTTAAATTACCGTG-TCTGTCAGAT 40722 |||||||| ||| | | |||||||||| ||||||| | | ||| |||||| | | Sbjct 552 TGTAGAAGTTCAGATTTGATCTGACAGTTTGCCGTTTTT--TGGCGGTGATCTGTCTGGT 495 Query 40723 TAATTTGAGCTTAAATTCTTTTCCACCCAAATCCGTTTTCCATCAAGTAAGGTTGCCATC 40782 | ||| | || ||||||| ||| || |||| || || | | ||| | | Sbjct 494 CAGTTTTGGTCTATGAACTTTTCCTTCCAGATTTGTTTCCCTTCGATCATGGTCTCGAAG 435 Query 40783 GGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATG-GTGATTATAATACATTAA 40841 |||||||| || || ||||||||||| ||||| || || || ||| || || | ||| Sbjct 434 GGTGTTCTTCCGCAACACATTTTTCCCTGATGGGTGCGTTGCGTG-TTGTAGTGATGTAA 376 Query 40842 CCACTCATCTAAATCCGCTTGTA-ATG-TCGTTAAATCCGTATAAATTTTCTTCCTAAAT 40899 ||| ||||| | ||| || |||| || ||| | | ||| | ||||| | ||| Sbjct 375 CCATTCATCCAGATCAGCCTGTAGCTGCTCGATGGTT--TGATACAGGTTCTTTCGAAAC 318 Query 40900 GCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATACCATTCGTC 40959 ||||| || || ||||| || | || ||||| ||||| || || || || || || ||| Sbjct 317 GCCACCTGATAGAATTCCTGCAGAATGGTTTTGTGGAAACGCTCACAAATGCCGTTTGTC 258 Query 40960 TGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTTATCGCTAAATAAAGCTCA 41019 ||||| ||| || || || | || || || || || || || || | | || | | Sbjct 257 TGGGGCGACTTAACCTTGGTCCTGGTGTGATCAATATCGTTGATGGCCAGGAACAGTTGA 198 Query 41020 TAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGT 41066 |||||||| || || | |||| ||||||||| |||| ||||| || Sbjct 197 TAATCGTGTTTGTCGGGCCTGCCGCAATATTCAGTTCCCCGGTCTGT 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166655867689458