Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2409 93.3 3e-14 seq38 93.3 3e-14 seq1430 89.7 3e-13 >seq2409 Length=1160440 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 || || ||||||||| | || || || || || |||||||| ||||| | ||||||||| Sbjct 33440 CCACCTGATCAACAGAGGTTGATCTTCGCTGGTAAACAACTTGAAGATGGACGCACTTTG 33499 Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | ||||||||||| || || |||||||| | ||| | ||||| ||||| |||| || Sbjct 33500 AGTGATTACAACATCCAGAAGGAGTCCACGCTTCATCTTGTTTTGCGGTTGAGAGGTGG 33558 >seq38 Length=948742 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 || || ||||||||| | || || || || || |||||||| ||||| | ||||||||| Sbjct 133284 CCACCTGATCAACAGAGGTTGATCTTCGCTGGTAAACAACTTGAAGATGGACGCACTTTG 133343 Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | ||||||||||| || || |||||||| | ||| | ||||| ||||| |||| || Sbjct 133344 AGTGATTACAACATCCAGAAGGAGTCCACGCTTCATCTTGTTTTGCGGTTGAGAGGTGG 133402 >seq1430 Length=1223854 Score = 89.7 bits (98), Expect = 3e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 || || ||||| ||| | || || || || || |||||||| ||||| | ||| ||||| Sbjct 153067 CCACCTGATCAGCAGAGGTTGATCTTCGCTGGTAAACAACTTGAAGATGGACGAACTTTG 153126 Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | ||||||||||| || || ||||||||| | ||| | ||||| ||||| |||| || Sbjct 153127 AGTGATTACAACATCCAGAAGGAGTCCACACTTCATCTTGTTTTGCGGTTGAGAGGTGG 153185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337869500196572