Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1013 127 3e-24 seq1592 125 1e-23 seq197 125 1e-23 seq1072 104 3e-17 seq1038 104 3e-17 seq203 104 3e-17 seq637 87.8 2e-12 >seq1013 Length=546551 Score = 127 bits (140), Expect = 3e-24 Identities = 315/469 (67%), Gaps = 13/469 (3%) Strand=Plus/Plus Query 171494 CTAGAAGGTTTGGTTTTAAAGGATATTAATGGTATGTACGAGCCCGGAAAACGTAGATGG 171553 ||||| ||| |||||||||| ||| | || ||||| || || || |||||| | ||| Sbjct 160099 CTAGAGGGTCTGGTTTTAAAAGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCATTGG 160158 Query 171554 CTTAAAATAAAGAGAGACTACTTGAACGAGGGTTCGATGGCGGATTCTGCAGATCTAGTA 171613 || ||| | || | |||||||| | | ||| ||||| ||| |||| ||| |||| Sbjct 160159 CTCAAAGTTAAAAAGGACTACTTAATGCAAGGTCAAATGGCTGATACTGCTGATTTAGTG 160218 Query 171614 GTATTGGGGGCATATTATGGAAAAGGAACAAAGGGTGGAATGATGGCAGTCTTTTTGATG 171673 ||| | ||||| |||||||| | || | || ||||| |||||| | || || | ||| Sbjct 160219 GTACTTGGGGCTTATTATGGTACCGGTAGCAAAGGTGGCATGATGTCTGTGTTCCTAATG 160278 Query 171674 GGCTGT-TATGACGATGACTCTGGTAAATGGAAAACTGTGACTAAATGTTC----TGGAC 171728 || ||| ||||| ||| | | || ||| ||||| ||||| ||| ||||| Sbjct 160279 GG-TGTGTATGATGATAAAGCATCCAAGTGGTGCACTGTTACTAAG-GTTGGAAATGGAC 160336 Query 171729 ATGATGATAATACTTT--AAGGGCTTTACAGGACCAATTAAAGATGATTAAAATTAATAA 171786 |||||||| | ||||| || || ||| | ||| | || ||| | ||||| | || Sbjct 160337 ATGATGATGAAACTTTAGAAAAAATTAACA--AACAACTGAAAATGGTGAAAATCAGCAA 160394 Query 171787 GAACCCCCAAAAAATTCCAGAGTGG-TTAGTAGTTAATAAAATATATATTCCCGATTTTG 171845 | | | ||| | ||| ||| ||| | | |||| || || | || ||||| | Sbjct 160395 GGATGTAAATAAAGTCCCAACATGGCTTAAT-TTAAATAGAAACCATGTCCCAGATTTAG 160453 Query 171846 TAGTAGAGGATCCTAAACAATCTCCTATATGGGAGATTTCAGGAGCTGAGTTCACATCAT 171905 | || | ||||| || || ||| | ||||||||| | ||| | ||||||||| | Sbjct 160454 TGGTTGCTGATCCGAAGTCCTCGCCTGTTTGGGAGATTACTGGAACCGAGTTCACAAAGT 160513 Query 171906 CCAAGTCGCATACAGCAAATGGAATATCTATTAGATTTCCTAGATTCAC 171954 | | || || || || ||| || || || || ||||| || |||| Sbjct 160514 CAGACTCTCACACTGCGGGTGGGATTTCAATCAGGTTTCCAAGGGTCAC 160562 >seq1592 Length=1045015 Score = 125 bits (138), Expect = 1e-23 Identities = 600/935 (64%), Gaps = 28/935 (3%) Strand=Plus/Plus Query 170984 CCTATGTTAGCAGAATCATGTGATTCTGTTAACAAGGCATTTAAAAAATTTCCATCTGGA 171043 |||||| | || ||| | ||| | || ||| | ||||| | ||||||| ||||| || Sbjct 681446 CCTATGCTGGCTGAAGCTTGTAAGTCAGTTGAGCAGGCAATGAAAAAATGTCCATACGGC 681505 Query 171044 ATGTTTGCAGAAGTAAAATATGATGGTGAACGAGTCCAAGTTCATAAAAACAATAATAAT 171103 |||| | | || |||| |||||||| ||| |||| ||| | |||| || || | Sbjct 681506 ATGTATTCTGAGATAAAGTATGATGGAGAAAGAGTGCAATTACATATGAAAGGAAAGGAC 681565 Query 171104 TTTGCCTTCTTTAGCAGAAACATGAAACCAGTTTT--ACCACATAAAGTTGATTATCTCA 171161 ||| |||| ||||||| | ||||| || | | |||| || || | | | Sbjct 681566 TTTCATTTCTACAGCAGAAGTTTAAAACCCGTATCCAATCACAAAATCATGCATTTTGAA 681625 Query 171162 AGGAATACCTTCCTAAAGCATTTAAAAAAGCTACCTC-TATTATCTTGGATTCCGAAATT 171220 | ||||| ||||| | |||||| ||| || | ||| || ||||| ||| || Sbjct 681626 A--AATACATTCCTGATGCATTTCCTGAAGG-ACATAGTATGATACTGGATAGCGAGGTT 681682 Query 171221 GTTCTAGTTGATG----AACATAATGTTCCACTTCCGTTTGGAAGTCTAGGAATACACAA 171276 | |||| |||| |||| | || ||||| ||||| | || ||||| || || Sbjct 681683 TTGTTAGTAGATGTTAAAACAGGAAAC-CCTCTTCCATTTGGTACGCTGGGAATTCATAA 681741 Query 171277 AAAGAAAGAGTACAAAAATGCTAATATGTGTTTGTTCGTCTTTGATTGTTTATACTTTGA 171336 ||||| | | || | |||| ||| | |||||||| |||||||| | || | ||| | Sbjct 681742 AAAGACCAAATTCACAGATGCAAATGTATGTTTGTTTATCTTTGATATTCTACATTTTAA 681801 Query 171337 TGGATTTGACATGACTGATATCCCATTGGTTGATAGACGATCGTTTCTAACAGAC-ATAA 171395 |||| | ||| | | | || || ||| || | || || |||| | | Sbjct 681802 TGGAGAAAATCTGATGGGAAAGTCGATGAAGGAAAGAAGAACCATTTTAG-AGACCAGTA 681860 Query 171396 TGACAGAAATACCTAATAGAATAGTATTTTCTGAATCGACAAATATTACCAACGAATCTC 171455 | ||||| || ||| | | | || || || | | | | | | ||| || | Sbjct 681861 TCCATGAAATTCCAAATCGTGTGATGTTGTCAGAGTTAAAATTTGTCAACAAGCAAGATG 681920 Query 171456 ATCTAA--CAGATGTATTGGAAGATGTACTAACGAGAAAACTAGAAGGTTTGGTTTTAAA 171513 | || | || ||| |||| | || ||| || | ||| ||||| |||||||||| Sbjct 681921 ACCTTAAGCATATG-ATTGTGCGGGTTATTAAAGA-AGGACTTGAAGGGCTGGTTTTAAA 681978 Query 171514 GGATATTAATGGTATGTACGAGCCCGGAAAACGTAGATGGCTTAAAATAAAGAGAGACTA 171573 ||| | || ||||| || || || |||||| | ||||| ||| | || | ||||| Sbjct 681979 AGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCACTGGCTCAAAGTTAAAAAGGACTA 682038 Query 171574 CTTGAACGAGGGTTCGATGGCGGATTCTGCAGATCTAGTAGTATTGGGGGCATATTATGG 171633 ||| | | || ||||| ||| |||| ||| |||| ||| | ||||| |||||||| Sbjct 682039 CTTAATGCAAGGCCAAATGGCTGATACTGCTGATTTAGTGGTACTTGGGGCTTATTATGG 682098 Query 171634 AAAAGGAACAAAGGGTGGAATGATGGCAGTCTTTTTGATGGGCTGT-TATGACGATGACT 171692 | || | || ||||| |||||| | || || | ||||| ||| ||||| ||| | Sbjct 682099 TACCGGTAGCAAAGGTGGCATGATGTCTGTGTTCCTAATGGG-TGTGTATGATGATAAGG 682157 Query 171693 CTGGTAAATGGAAAACTGTGACTAAATGTTC----TGGACATGATGATAATACTTT--AA 171746 | | | ||| ||||| ||||| ||| ||||||||||||| | ||||| || Sbjct 682158 CATCTCAGTGGTGCACTGTTACTAAG-GTTGGAAATGGACATGATGATGAAACTTTAGAA 682216 Query 171747 GGGCTTTACAGGACCAATTAAAGATGATTAAAATTAATAAGAACCCCCAAAAAATTCCAG 171806 || ||| | ||| | || ||| | ||||| | ||| | | ||| | ||| Sbjct 682217 AAAATTAACA--AACAACTGAAAATGGTGAAAATCAGCAAGGATGTAAATAAAGTCCCAA 682274 Query 171807 AGTGGTTAGTAGTTAATAAAATATATATTCCCGATTTTGTAGTAGAGGATCCTAAACAAT 171866 ||| || | |||| || || | || ||||| || || | ||||| || | Sbjct 682275 CATGGCTAAATTTAAATAGAAACCATGTCCCAGATTTAGTGGTGGCTGATCCGAAGTCCT 682334 Query 171867 CTCCTATATGGGAGATTTCAGGAGCTGAGTTCACA 171901 | ||| | |||||||| | ||| | ||||||||| Sbjct 682335 CGCCTGTTTGGGAGATCACTGGAACCGAGTTCACA 682369 >seq197 Length=433710 Score = 125 bits (138), Expect = 1e-23 Identities = 600/935 (64%), Gaps = 28/935 (3%) Strand=Plus/Plus Query 170984 CCTATGTTAGCAGAATCATGTGATTCTGTTAACAAGGCATTTAAAAAATTTCCATCTGGA 171043 |||||| | || ||| | ||| | || ||| | ||||| | ||||||| ||||| || Sbjct 59563 CCTATGCTGGCTGAAGCTTGTAAGTCAGTTGAGCAGGCAATGAAAAAATGTCCATACGGC 59622 Query 171044 ATGTTTGCAGAAGTAAAATATGATGGTGAACGAGTCCAAGTTCATAAAAACAATAATAAT 171103 |||| | | || |||| |||||||| ||| |||| ||| | |||| || || | Sbjct 59623 ATGTATTCTGAGATAAAGTATGATGGAGAAAGAGTGCAATTACATATGAAAGGAAAGGAC 59682 Query 171104 TTTGCCTTCTTTAGCAGAAACATGAAACCAGTTTT--ACCACATAAAGTTGATTATCTCA 171161 ||| |||| ||||||| | ||||| || | | |||| || || | | | Sbjct 59683 TTTCATTTCTACAGCAGAAGTTTAAAACCCGTATCCAATCACAAAATCATGCATTTTGAA 59742 Query 171162 AGGAATACCTTCCTAAAGCATTTAAAAAAGCTACCTC-TATTATCTTGGATTCCGAAATT 171220 | ||||| ||||| | |||||| ||| || | ||| || ||||| ||| || Sbjct 59743 A--AATACATTCCTGATGCATTTCCTGAAGG-ACATAGTATGATACTGGATAGCGAGGTT 59799 Query 171221 GTTCTAGTTGATG----AACATAATGTTCCACTTCCGTTTGGAAGTCTAGGAATACACAA 171276 | |||| |||| |||| | || ||||| ||||| | || ||||| || || Sbjct 59800 TTGTTAGTAGATGTTAAAACAGGAAAC-CCTCTTCCATTTGGTACGCTGGGAATTCATAA 59858 Query 171277 AAAGAAAGAGTACAAAAATGCTAATATGTGTTTGTTCGTCTTTGATTGTTTATACTTTGA 171336 ||||| | | || | |||| ||| | |||||||| |||||||| | || | ||| | Sbjct 59859 AAAGACCAAATTCACAGATGCAAATGTATGTTTGTTTATCTTTGATATTCTACATTTTAA 59918 Query 171337 TGGATTTGACATGACTGATATCCCATTGGTTGATAGACGATCGTTTCTAACAGAC-ATAA 171395 |||| | ||| | | | || || ||| || | || || |||| | | Sbjct 59919 TGGAGAAAATCTGATGGGAAAGTCGATGAAGGAAAGAAGAACCATTTTAG-AGACCAGTA 59977 Query 171396 TGACAGAAATACCTAATAGAATAGTATTTTCTGAATCGACAAATATTACCAACGAATCTC 171455 | ||||| || ||| | | | || || || | | | | | | ||| || | Sbjct 59978 TCCATGAAATTCCAAATCGTGTGATGTTGTCAGAGTTAAAATTTGTCAACAAGCAAGATG 60037 Query 171456 ATCTAA--CAGATGTATTGGAAGATGTACTAACGAGAAAACTAGAAGGTTTGGTTTTAAA 171513 | || | || ||| |||| | || ||| || | ||| ||||| |||||||||| Sbjct 60038 ACCTTAAGCATATG-ATTGTGCGGGTTATTAAAGA-AGGACTTGAAGGGCTGGTTTTAAA 60095 Query 171514 GGATATTAATGGTATGTACGAGCCCGGAAAACGTAGATGGCTTAAAATAAAGAGAGACTA 171573 ||| | || ||||| || || || |||||| | ||||| ||| | || | ||||| Sbjct 60096 AGATGTCAAAGGTATCTATGAACCGGGAAAAAGGCACTGGCTCAAAGTTAAAAAGGACTA 60155 Query 171574 CTTGAACGAGGGTTCGATGGCGGATTCTGCAGATCTAGTAGTATTGGGGGCATATTATGG 171633 ||| | | || ||||| ||| |||| ||| |||| ||| | ||||| |||||||| Sbjct 60156 CTTAATGCAAGGCCAAATGGCTGATACTGCTGATTTAGTGGTACTTGGGGCTTATTATGG 60215 Query 171634 AAAAGGAACAAAGGGTGGAATGATGGCAGTCTTTTTGATGGGCTGT-TATGACGATGACT 171692 | || | || ||||| |||||| | || || | ||||| ||| ||||| ||| | Sbjct 60216 TACCGGTAGCAAAGGTGGCATGATGTCTGTGTTCCTAATGGG-TGTGTATGATGATAAGG 60274 Query 171693 CTGGTAAATGGAAAACTGTGACTAAATGTTC----TGGACATGATGATAATACTTT--AA 171746 | | | ||| ||||| ||||| ||| ||||||||||||| | ||||| || Sbjct 60275 CATCTCAGTGGTGCACTGTTACTAAG-GTTGGAAATGGACATGATGATGAAACTTTAGAA 60333 Query 171747 GGGCTTTACAGGACCAATTAAAGATGATTAAAATTAATAAGAACCCCCAAAAAATTCCAG 171806 || ||| | ||| | || ||| | ||||| | ||| | | ||| | ||| Sbjct 60334 AAAATTAACA--AACAACTGAAAATGGTGAAAATCAGCAAGGATGTAAATAAAGTCCCAA 60391 Query 171807 AGTGGTTAGTAGTTAATAAAATATATATTCCCGATTTTGTAGTAGAGGATCCTAAACAAT 171866 ||| || | |||| || || | || ||||| || || | ||||| || | Sbjct 60392 CATGGCTAAATTTAAATAGAAACCATGTCCCAGATTTAGTGGTGGCTGATCCGAAGTCCT 60451 Query 171867 CTCCTATATGGGAGATTTCAGGAGCTGAGTTCACA 171901 | ||| | |||||||| | ||| | ||||||||| Sbjct 60452 CGCCTGTTTGGGAGATCACTGGAACCGAGTTCACA 60486 >seq1072 Length=3228912 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || ||||| ||||| | ||||| | ||||| |||||||| || |||||||| | ||| Sbjct 2898256 TGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATTGAT 2898315 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 || || ||||||| ||||||||||| || ||||||||||| || || | | | ||| Sbjct 2898316 TCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTATGAGAAGACTG 2898375 Query 77247 TTTCTGAGACCATGT 77261 || |||| ||||||| Sbjct 2898376 TTCCTGATACCATGT 2898390 Score = 95.1 bits (104), Expect = 2e-14 Identities = 107/142 (75%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 76844 CAGACT-CCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATAT 76902 |||||| ||| || |||||||||||||| |||||||||| || |||| || ||||| | Sbjct 2897206 CAGACTTCCAGCCATAGAAATGCATGCTGGTCAGTTTGGCGTAGTTAGGCTCAGCTATGT 2897265 Query 76903 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 76962 | || || | ||| || || ||||||||||| |||| || || ||||| || | | Sbjct 2897266 GGATGTTGAGACTCTGGCTCTGGTCGATGAAAGCAGCTCTGTCGGCGGCCATCTTGACGA 2897325 Query 76963 TGGTCTTTTGAGGAATTTCCCA 76984 || ||||||| | || ||||| Sbjct 2897326 TGTTCTTTTGCGATATCTCCCA 2897347 >seq1038 Length=472731 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || ||||| ||||| | ||||| | ||||| |||||||| || |||||||| | ||| Sbjct 78628 TGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATTGAT 78687 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 || || ||||||| ||||||||||| || ||||||||||| || || | | | ||| Sbjct 78688 TCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTATGAGAAGACTG 78747 Query 77247 TTTCTGAGACCATGT 77261 || |||| ||||||| Sbjct 78748 TTCCTGATACCATGT 78762 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 76844 CAGACT-CCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATAT 76902 |||||| ||| || |||||||||||||| |||||||||| ||| |||| || ||||| | Sbjct 77592 CAGACTTCCAGCCATAGAAATGCATGCTAGTCAGTTTGGCATAGTTAGGCTCAGCTATGT 77651 Query 76903 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 76962 | || || | ||| || || ||||| ||||| ||| || || ||||| || | | Sbjct 77652 GGATGTTGAGGCTCTGGCTCTGGTCGATAAAAGCAGCTCGGTCGGCGGCCATCTTGACGA 77711 Query 76963 TGGTCTTTTGAGGAATTTCCCAAATAGT 76990 || ||||||| | || ||||| | ||| Sbjct 77712 TGTTCTTTTGCGATATCTCCCACACAGT 77739 >seq203 Length=1902415 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || ||||| ||||| | ||||| | ||||| |||||||| || |||||||| | ||| Sbjct 1535334 TGGAATTCCCCAGATAGAACTCTTCTGGTGTATATATTACTTGTGTATGGTTCAATTGAT 1535393 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 || || ||||||| ||||||||||| || ||||||||||| || || | | | ||| Sbjct 1535394 TCGTTATTTCCCAGGATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTATGAGAAGACTG 1535453 Query 77247 TTTCTGAGACCATGT 77261 || |||| ||||||| Sbjct 1535454 TTCCTGATACCATGT 1535468 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 76844 CAGACT-CCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATAT 76902 |||||| ||| || |||||||||||||| |||||||||| ||| |||| || ||||| | Sbjct 1534298 CAGACTTCCAGCCATAGAAATGCATGCTAGTCAGTTTGGCATAGTTAGGCTCAGCTATGT 1534357 Query 76903 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 76962 | || || | ||| || || ||||| ||||| ||| || || ||||| || | | Sbjct 1534358 GGATGTTGAGGCTCTGGCTCTGGTCGATAAAAGCAGCTCGGTCGGCGGCCATCTTGACGA 1534417 Query 76963 TGGTCTTTTGAGGAATTTCCCAAATAGT 76990 || ||||||| | || ||||| | ||| Sbjct 1534418 TGTTCTTTTGCGATATCTCCCACACAGT 1534445 >seq637 Length=333953 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/224 (69%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | ||| || || || || | || ||||| || || ||||| || Sbjct 27918 TCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAGCCCTCGTTTCTTT 27977 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 | ||| || || || || || || ||| || || || || || || | ||||||||| Sbjct 27978 AACCAGAAAATGGCAGCAAATGACCCACTGAAAAAGATCCCCTCCACAGAGGCAAATGCG 28037 Query 48285 GTAAGTCTCTCTCCGTAACTGGCTTCGTTGT---GTATCCACCGTTGTGCCCAATCAGCC 48341 | | || || | || || || |||| ||||||| | ||||| || ||| Sbjct 28038 ATTATTCGTTCAGCATACAGTGCGTCCTTGTCTGATATCCACTTGAGAGCCCACTCTGCC 28097 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 |||||| ||||| |||| ||||| || ||||| || ||||| Sbjct 28098 TTCTTCCGCACACATGGCAAGGTTTCGATGGCATTGAAAAGAAA 28141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694373487609760