Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1430 87.8 4e-12 seq1607 84.2 5e-11 seq498 84.2 5e-11 seq200 84.2 5e-11 >seq1430 Length=1223854 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||||||||| || ||||| || |||||||||||||| ||||||| |||||||| Sbjct 153167 ACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAATCACTCAAAGTTCGTCCATCTTCA 153108 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || ||| || |||||||| | ||||||||| || | | |||||| Sbjct 153107 AGTTGTTTACCAGCGAAGATCAACCTCTGCTGATCAGGTGGAATTCCT 153060 >seq1607 Length=2233834 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||||| |||||||| ||||||||||| ||| || || | |||||| Sbjct 1468427 AGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCT 1468486 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || ||| || ||||||||||| | ||||| |||| | ||||||| Sbjct 1468487 TCAAGCTGTTTTCCAGCGAAGATAAGACGTTGCTGATCCGGAGGGATTCCT 1468537 >seq498 Length=2034514 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||||| |||||||| ||||||||||| ||| || || | |||||| Sbjct 1866463 AGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCT 1866404 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || ||| || ||||||||||| | ||||| |||| | ||||||| Sbjct 1866403 TCAAGCTGTTTACCAGCGAAGATAAGACGTTGCTGATCCGGAGGGATTCCT 1866353 >seq200 Length=1515198 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||||| |||||||| ||||||||||| ||| || || | |||||| Sbjct 878176 AGGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTCAATGTGCGGCCATCT 878235 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || ||| || ||||||||||| | ||||| |||| | ||||||| Sbjct 878236 TCAAGCTGTTTACCAGCGAAGATAAGACGTTGCTGATCCGGAGGGATTCCT 878286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153318033764039