Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1013 141 1e-28 seq1592 129 6e-25 seq197 129 6e-25 seq1446 111 2e-19 seq2986 84.2 2e-11 seq1412 84.2 2e-11 seq368 84.2 2e-11 seq1343 82.4 8e-11 seq170 82.4 8e-11 >seq1013 Length=546551 Score = 141 bits (156), Expect = 1e-28 Identities = 347/511 (68%), Gaps = 15/511 (3%) Strand=Plus/Plus Query 128443 AAGGTTTAGAGGGAGTTATCTTAAAATACC-CAAATGAATTATATATACCAGGTAAAAGA 128501 |||| ||||||| | | |||||| | |||| | || ||| ||| || ||||| Sbjct 160094 AAGGGCTAGAGGGTCTGGTTTTAAAAGATGTCAAAGGTATC-TATGAACCGGGAAAAAGG 160152 Query 128502 AAATGGTTAAAGGTAAAAAGGGATTATTTAAATAATGGATCAATGGCAGATTCTGCTGAT 128561 | ||| | || || |||| ||| || |||| | || |||||| ||| |||||||| Sbjct 160153 CATTGGCTCAAAGTTAAAAAGGACTACTTAATGCAAGGTCAAATGGCTGATACTGCTGAT 160212 Query 128562 TTAGTTGTGTTGGGTGCATATTATGGTAAAGGTAAAAGATATGGAGGAATAAAATCTATA 128621 ||||| || | || || |||||||||| |||| | | || || || | ||| | Sbjct 160213 TTAGTGGTACTTGGGGCTTATTATGGTACCGGTAGCAAA---GGTGGCATGATGTCTGTG 160269 Query 128622 TTTCTTATGGGATGT-TATGATAAAGAAACAGATACATGGAAAACTGTTACAAAA--TGC 128678 || || ||||| ||| |||||| | || || | ||| |||||||| || || Sbjct 160270 TTCCTAATGGG-TGTGTATGATGATAAAGCATCCAAGTGGTGCACTGTTACTAAGGTTGG 160328 Query 128679 TCAGGGTT-TAATGATGAAACATTA-AAAGAATTA-CAATCAATTGATA-TGATTAAAAT 128734 | || | |||||||||| ||| ||| ||||| ||| ||| ||| | || | ||||| Sbjct 160329 AAATGGACATGATGATGAAACTTTAGAAAAAATTAACAAACAACTGAAAATGGTGAAAAT 160388 Query 128735 TAGTAAAAATAAAGATAAAATTCCAAATTGG-TTAATTATTAACAGTATTCATTATCCGG 128793 || || || | ||||| | |||| ||| |||||| | || || | ||| || | Sbjct 160389 CAGCAAGGATGTAAATAAAGTCCCAACATGGCTTAATT-TAAATAGAAACCATGTCCCAG 160447 Query 128794 ATTTTATTATCAAAGATCCAAAATCATCTCCTGTTTGGGAAATAATTGGATATGAATTTA 128853 |||| | | ||||| || || || ||||||||||| || | |||| || || | Sbjct 160448 ATTTAGTGGTTGCTGATCCGAAGTCCTCGCCTGTTTGGGAGATTACTGGAACCGAGTTCA 160507 Query 128854 CAAAATCACCATCTCATACAGCGAATGGAATATCAATTAGGTTTCCTAGATGCAAAAATA 128913 |||| ||| ||||| || ||| ||| || ||||| |||||||| || || ||| | Sbjct 160508 CAAAGTCAGACTCTCACACTGCGGGTGGGATTTCAATCAGGTTTCCAAGGGTCACAAAAA 160567 Query 128914 TACGAAATGATAAAAATTGGTTATCTGCCAC 128944 | |||| || || |||||| | ||||||| Sbjct 160568 TTCGAAGAGACAAGAATTGGGAAACTGCCAC 160598 >seq1592 Length=1045015 Score = 129 bits (142), Expect = 6e-25 Identities = 312/463 (67%), Gaps = 11/463 (2%) Strand=Plus/Plus Query 128489 ACCAGGTAAAAGAAAATGGTTAAAGGTAAAAAGGGATTATTTAAATAATGGATCAATGGC 128548 ||| || ||||| | ||| | || || |||| ||| || |||| | || |||||| Sbjct 682000 ACCGGGAAAAAGGCACTGGCTCAAAGTTAAAAAGGACTACTTAATGCAAGGCCAAATGGC 682059 Query 128549 AGATTCTGCTGATTTAGTTGTGTTGGGTGCATATTATGGTAAAGGTAAAAGATATGGAGG 128608 ||| ||||||||||||| || | || || |||||||||| |||| | | || || Sbjct 682060 TGATACTGCTGATTTAGTGGTACTTGGGGCTTATTATGGTACCGGTAGCAAA---GGTGG 682116 Query 128609 AATAAAATCTATATTTCTTATGGGATGT-TATGATAAAGAAACAGATACATGGAAAACTG 128667 || | ||| | || || ||||| ||| |||||| | | || | ||| |||| Sbjct 682117 CATGATGTCTGTGTTCCTAATGGG-TGTGTATGATGATAAGGCATCTCAGTGGTGCACTG 682175 Query 128668 TTACAAAA--TGCTCAGGGTT-TAATGATGAAACATTA-AAAGAATTA-CAATCAATTGA 128722 |||| || || | || | |||||||||| ||| ||| ||||| ||| ||| ||| Sbjct 682176 TTACTAAGGTTGGAAATGGACATGATGATGAAACTTTAGAAAAAATTAACAAACAACTGA 682235 Query 128723 TA-TGATTAAAATTAGTAAAAATAAAGATAAAATTCCAAATTGGTTAATTATTAACAGTA 128781 | || | ||||| || || || | ||||| | |||| ||| ||| | | || || | Sbjct 682236 AAATGGTGAAAATCAGCAAGGATGTAAATAAAGTCCCAACATGGCTAAATTTAAATAGAA 682295 Query 128782 TTCATTATCCGGATTTTATTATCAAAGATCCAAAATCATCTCCTGTTTGGGAAATAATTG 128841 ||| || ||||| | | ||||| || || || ||||||||||| || | || Sbjct 682296 ACCATGTCCCAGATTTAGTGGTGGCTGATCCGAAGTCCTCGCCTGTTTGGGAGATCACTG 682355 Query 128842 GATATGAATTTACAAAATCACCATCTCATACAGCGAATGGAATATCAATTAGGTTTCCTA 128901 || || || ||||| ||| ||||| || ||| ||| || ||||| ||||||| | Sbjct 682356 GAACCGAGTTCACAAAGTCAGACTCTCACACTGCGGGTGGGATTTCAATCCGGTTTCCAA 682415 Query 128902 GATGCAAAAATATACGAAATGATAAAAATTGGTTATCTGCCAC 128944 | | ||| || |||| || || |||||| | ||||||| Sbjct 682416 GGGTTACAAAAATTCGAAGAGACAAGAATTGGGAAACTGCCAC 682458 >seq197 Length=433710 Score = 129 bits (142), Expect = 6e-25 Identities = 312/463 (67%), Gaps = 11/463 (2%) Strand=Plus/Plus Query 128489 ACCAGGTAAAAGAAAATGGTTAAAGGTAAAAAGGGATTATTTAAATAATGGATCAATGGC 128548 ||| || ||||| | ||| | || || |||| ||| || |||| | || |||||| Sbjct 60117 ACCGGGAAAAAGGCACTGGCTCAAAGTTAAAAAGGACTACTTAATGCAAGGCCAAATGGC 60176 Query 128549 AGATTCTGCTGATTTAGTTGTGTTGGGTGCATATTATGGTAAAGGTAAAAGATATGGAGG 128608 ||| ||||||||||||| || | || || |||||||||| |||| | | || || Sbjct 60177 TGATACTGCTGATTTAGTGGTACTTGGGGCTTATTATGGTACCGGTAGCAAA---GGTGG 60233 Query 128609 AATAAAATCTATATTTCTTATGGGATGT-TATGATAAAGAAACAGATACATGGAAAACTG 128667 || | ||| | || || ||||| ||| |||||| | | || | ||| |||| Sbjct 60234 CATGATGTCTGTGTTCCTAATGGG-TGTGTATGATGATAAGGCATCTCAGTGGTGCACTG 60292 Query 128668 TTACAAAA--TGCTCAGGGTT-TAATGATGAAACATTA-AAAGAATTA-CAATCAATTGA 128722 |||| || || | || | |||||||||| ||| ||| ||||| ||| ||| ||| Sbjct 60293 TTACTAAGGTTGGAAATGGACATGATGATGAAACTTTAGAAAAAATTAACAAACAACTGA 60352 Query 128723 TA-TGATTAAAATTAGTAAAAATAAAGATAAAATTCCAAATTGGTTAATTATTAACAGTA 128781 | || | ||||| || || || | ||||| | |||| ||| ||| | | || || | Sbjct 60353 AAATGGTGAAAATCAGCAAGGATGTAAATAAAGTCCCAACATGGCTAAATTTAAATAGAA 60412 Query 128782 TTCATTATCCGGATTTTATTATCAAAGATCCAAAATCATCTCCTGTTTGGGAAATAATTG 128841 ||| || ||||| | | ||||| || || || ||||||||||| || | || Sbjct 60413 ACCATGTCCCAGATTTAGTGGTGGCTGATCCGAAGTCCTCGCCTGTTTGGGAGATCACTG 60472 Query 128842 GATATGAATTTACAAAATCACCATCTCATACAGCGAATGGAATATCAATTAGGTTTCCTA 128901 || || || ||||| ||| ||||| || ||| ||| || ||||| ||||||| | Sbjct 60473 GAACCGAGTTCACAAAGTCAGACTCTCACACTGCGGGTGGGATTTCAATCCGGTTTCCAA 60532 Query 128902 GATGCAAAAATATACGAAATGATAAAAATTGGTTATCTGCCAC 128944 | | ||| || |||| || || |||||| | ||||||| Sbjct 60533 GGGTTACAAAAATTCGAAGAGACAAGAATTGGGAAACTGCCAC 60575 >seq1446 Length=577078 Score = 111 bits (122), Expect = 2e-19 Identities = 109/137 (80%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 8458 AGGCAAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCA 8517 |||| | |||||||||| || | | ||| || ||||||||||||| |||||||| | Sbjct 445452 AGGCGCATGCCACCACGCACAGATCACTTTGGTTTTTTTAGTAGAGACGGGGTTTCAGTA 445393 Query 8518 TGTTGGCCAGGCTGGTCT-CGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCC 8576 |||||||||| | |||| |||||||||| ||| ||||||| ||||||||| |||||| Sbjct 445392 CGTTGGCCAGGAT-GTCTCCGAACTCCTGTCCT--GGTGATCCGCCTGCCTCGCCCTCCC 445336 Query 8577 AAAGTGCTGGGATTACA 8593 | || |||||||||| Sbjct 445335 ACTTTGTTGGGATTACA 445319 >seq2986 Length=361983 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| ||||| || | |||||| || || ||||| || ||||| || |||||||| || Sbjct 208743 TCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCTTT 208802 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGC 23651 | ||| || || ||||||||||| || || || || ||||| |||| ||||| || Sbjct 208803 AACCAGAAAATGGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATGC 208861 >seq1412 Length=884851 Score = 84.2 bits (92), Expect = 2e-11 Identities = 176/259 (68%), Gaps = 10/259 (4%) Strand=Plus/Plus Query 64442 GATGAAGGGCAATTTTTTACTGATATAGTTGAATTTTCTGA--AAATATGGCCAATAAAG 64499 |||||||||||||||||| ||||||| ||| | |||| ||| |||| | || | | Sbjct 29349 GATGAAGGGCAATTTTTTCCTGATATTGTTCAGTTTTGTGACGAAATGTCATCACT--TG 29406 Query 64500 GAAAAATTGTAATTGTTTCAGCGTTAGATGCGACATATAAAAGAGAACCATTTGGTAATA 64559 |||| | ||| ||||| |||| || |||| || | | || || |||| || || | Sbjct 29407 GAAAGACTGTTATTGTGGCAGCTTTGGATGGTACCTTTGAACGAAAACCCTTCGGCTCTG 29466 Query 64560 TCCTAAATCTAGTTCCATTAGCTGAAAAAGTAATAAAATTAAATGCTATATGTAAAATAT 64619 | || || || | ||| ||||||| | || | ||| ||| ||| | |||| | | Sbjct 29467 TGCTCGATTTAATCCCAATAGCTGAGACTGTGGTCAAACTAAGTGCAGTTTGTACATCTT 29526 Query 64620 GTTTCAAAGATGCTGCATTTACTAAAAGATT---ATGCAAAAGTACTGAAATCGAATTAA 64676 | || | ||| || || ||||| ||||| | || | || |||| | | ||| | | Sbjct 29527 GCTTTAGAGAAGCAGCTTTTACAAAAAGGCTGGGATCCGAA---ACTGCAGTGGAAGTTA 29583 Query 64677 TTGGTGGAGAGGACAAATA 64695 ||||||| | || ||||| Sbjct 29584 TTGGTGGGGCTGATAAATA 29602 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/208 (69%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 64442 GATGAAGGGCAATTTTTTACTGATATAGTTGAATTTTCTGA--AAATATGGCCAATAAAG 64499 |||||||||||||||||| ||||||| ||| | |||| ||| |||| | || | || Sbjct 46460 GATGAAGGGCAATTTTTTCCTGATATTGTTCAGTTTTGTGACGAAATGTCATCACT--AG 46517 Query 64500 GAAAAATTGTAATTGTTTCAGCGTTAGATGCGACATATAAAAGAGAACCATTTGGTAATA 64559 | || | ||| ||||| |||| || |||| || | | || || |||| || || | Sbjct 46518 GGAAGACTGTTATTGTGGCAGCTTTGGATGGTACCTTTGAACGAAAACCCTTCGGCTCTG 46577 Query 64560 TCCTAAATCTAGTTCCATTAGCTGAAAAAGTAATAAAATTAAATGCTATATGTAAAATAT 64619 | || || || | ||| ||||||| | || | ||| ||| ||| | |||| | | Sbjct 46578 TGCTCGATTTAATCCCAATAGCTGAGACTGTGGTCAAACTAAGTGCAGTTTGTACATCTT 46637 Query 64620 GTTTCAAAGATGCTGCATTTACTAAAAG 64647 | || | ||| || || ||||| ||||| Sbjct 46638 GCTTTAGAGAAGCAGCTTTTACAAAAAG 46665 >seq368 Length=471785 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| ||||| || | |||||| || || ||||| || ||||| || |||||||| || Sbjct 208550 TCATCTCTACTGATGAGTTCATTGGAGAAAGTTAAGCCAGGCATCAACCCTCGTTTCTTT 208609 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGC 23651 | ||| || || ||||||||||| || || || || ||||| |||| ||||| || Sbjct 208610 AACCAGAAAATGGCAGCAAATGAACCACTGAAAAAGATCCCCTCCACAGAGGCAAATGC 208668 >seq1343 Length=1282261 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/208 (69%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 64442 GATGAAGGGCAATTTTTTACTGATATAGTTGAATTTTCTGA--AAATATGGCCAATAAAG 64499 |||||||||||||||||| ||||||| ||| | |||| ||| |||| | || | | Sbjct 1006583 GATGAAGGGCAATTTTTTCCTGATATTGTTCAGTTTTGTGACGAAATGTCATCACT--TG 1006526 Query 64500 GAAAAATTGTAATTGTTTCAGCGTTAGATGCGACATATAAAAGAGAACCATTTGGTAATA 64559 |||| | ||| ||||| |||| ||||||| || | | || || |||| || || | Sbjct 1006525 GAAAGACTGTTATTGTGGCAGCTTTAGATGGTACCTTTGAACGAAAACCCTTCGGCTCTG 1006466 Query 64560 TCCTAAATCTAGTTCCATTAGCTGAAAAAGTAATAAAATTAAATGCTATATGTAAAATAT 64619 | || || || | ||| ||||||| | || || ||| ||| || | || | | | Sbjct 1006465 TGCTCGATTTAATCCCAATAGCTGAGACTGTCATCAAACTAAGCGCAGTTTGCACATCTT 1006406 Query 64620 GTTTCAAAGATGCTGCATTTACTAAAAG 64647 | || | ||| || || ||||| ||||| Sbjct 1006405 GCTTTAGAGAAGCAGCTTTTACAAAAAG 1006378 >seq170 Length=769231 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/208 (69%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 64442 GATGAAGGGCAATTTTTTACTGATATAGTTGAATTTTCTGA--AAATATGGCCAATAAAG 64499 |||||||||||||||||| ||||||| ||| | |||| ||| |||| | || | | Sbjct 306156 GATGAAGGGCAATTTTTTCCTGATATTGTTCAGTTTTGTGACGAAATGTCATCACT--TG 306213 Query 64500 GAAAAATTGTAATTGTTTCAGCGTTAGATGCGACATATAAAAGAGAACCATTTGGTAATA 64559 |||| | ||| ||||| |||| ||||||| || | | || || |||| || || | Sbjct 306214 GAAAGACTGTTATTGTGGCAGCTTTAGATGGTACCTTTGAACGAAAACCCTTCGGCTCTG 306273 Query 64560 TCCTAAATCTAGTTCCATTAGCTGAAAAAGTAATAAAATTAAATGCTATATGTAAAATAT 64619 | || || || | ||| ||||||| | || || ||| ||| || | || | | | Sbjct 306274 TGCTCGATTTAATCCCAATAGCTGAGACTGTCATCAAACTAAGCGCAGTTTGCACATCTT 306333 Query 64620 GTTTCAAAGATGCTGCATTTACTAAAAG 64647 | || | ||| || || ||||| ||||| Sbjct 306334 GCTTTAGAGAAGCAGCTTTTACAAAAAG 306361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521266308932600