Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20savignyi_20[genbank_20GCA_5F000149265.1_202004-02-25] 34,009 sequences; 587,352,817 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1607 95.1 3e-14 seq498 91.5 4e-13 seq200 91.5 4e-13 seq737 87.8 4e-12 seq185 87.8 4e-12 >seq1607 Length=2233834 Score = 95.1 bits (104), Expect = 3e-14 Identities = 86/107 (80%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||| | Sbjct 1468537 AGGAATCCCTCCGGATCAGCAACGTCTTATCTTCGCTGGAAAACAGCTTGAAGATGGCCG 1468478 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || | ||| || ||| |||| ||||| || || || || |||| Sbjct 1468477 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCA-CTTG 1468432 Score = 91.5 bits (100), Expect = 4e-13 Identities = 85/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 |||||||||||| || |||||||| ||||||||||| ||||||||||| |||||||| | Sbjct 1461890 AGGAATCCCTCCCGATCAGCAACGTCTTATCTTCGCTGGAAAACAGCTTGAAGATGGCCG 1461831 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || | ||| || ||| |||| ||||| || || || || |||| Sbjct 1461830 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCA-CTTG 1461785 Score = 91.5 bits (100), Expect = 4e-13 Identities = 85/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 |||||||||||| || |||||||| ||||||||||| ||||||||||| |||||||| | Sbjct 1467518 AGGAATCCCTCCCGATCAGCAACGTCTTATCTTCGCTGGAAAACAGCTTGAAGATGGCCG 1467459 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || | ||| || ||| | |||||||| || || || || |||| Sbjct 1467458 CACATTGAGCGACTACAACATTCAAAAAGAGTCCACTCTTCA-CTTG 1467413 Score = 86.0 bits (94), Expect = 2e-11 Identities = 84/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||||||||||||||| |||||||| || ||||| || ||||||||||| |||||||| | Sbjct 1461332 AGGAATCCCTCCGGATCAGCAACGTCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCCG 1461273 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || | ||| || ||| |||| ||||| || || || || |||| Sbjct 1461272 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCA-CTTG 1461227 Score = 86.0 bits (94), Expect = 2e-11 Identities = 84/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 |||||||||||| || |||||||| |||||||| || ||||||||||| |||||||| | Sbjct 1465189 AGGAATCCCTCCCGATCAGCAACGTCTTATCTTTGCTGGAAAACAGCTTGAAGATGGCCG 1465130 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || | ||| || ||| |||| ||||| || || || || |||| Sbjct 1465129 CACGTTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCA-CTTG 1465084 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| | || ||||| || |||||||| ||||| || |||||| Sbjct 1468924 CAGATTTTCGTGAAAACCTTGACTGGAAAGACCATCACCCTTGAGGTTGAGGCATCAGAC 1468865 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||| || || || |||||| || ||||||||||| Sbjct 1468864 TCCATCGACAATGTTAAGTCAAAGATCCAAGACAAAGAAGG 1468824 >seq498 Length=2034514 Score = 91.5 bits (100), Expect = 4e-13 Identities = 85/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||||||||||||||| |||||||| ||||||||||| || |||||||| |||||||| | Sbjct 1866353 AGGAATCCCTCCGGATCAGCAACGTCTTATCTTCGCTGGTAAACAGCTTGAAGATGGCCG 1866412 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || | ||| || ||| |||| ||||| || || || || |||| Sbjct 1866413 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCA-CTTG 1866458 Score = 91.5 bits (100), Expect = 4e-13 Identities = 85/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 |||||||||||| || |||||||| ||||||||||| ||||||||||| |||||||| | Sbjct 1870089 AGGAATCCCTCCCGATCAGCAACGTCTTATCTTCGCTGGAAAACAGCTTGAAGATGGCCG 1870148 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || | ||| || ||| |||| ||||| || || || || |||| Sbjct 1870149 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCA-CTTG 1870194 Score = 91.5 bits (100), Expect = 4e-13 Identities = 85/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 |||||||||||| || |||||||| ||||||||||| ||||||||||| |||||||| | Sbjct 1870578 AGGAATCCCTCCTGATCAGCAACGTCTTATCTTCGCTGGAAAACAGCTTGAAGATGGCCG 1870637 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || | ||| || ||| |||| ||||| || || || || |||| Sbjct 1870638 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCA-CTTG 1870683 Score = 86.0 bits (94), Expect = 2e-11 Identities = 84/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 |||||||||||| || |||||||| |||||||| || ||||||||||| |||||||| | Sbjct 1871561 AGGAATCCCTCCCGATCAGCAACGTCTTATCTTTGCTGGAAAACAGCTTGAAGATGGCCG 1871620 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || | ||| || ||| |||| ||||| || || || || |||| Sbjct 1871621 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCA-CTTG 1871666 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| | || ||||| || |||||||| ||||| || |||||| Sbjct 1865965 CAGATTTTCGTGAAAACCTTGACTGGAAAGACCATCACCCTAGAGGTTGAGGCATCAGAC 1866024 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||| || || || |||||| || ||||||||||| Sbjct 1866025 TCCATCGACAATGTTAAGTCAAAGATCCAAGACAAAGAAGG 1866065 >seq200 Length=1515198 Score = 91.5 bits (100), Expect = 4e-13 Identities = 85/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 |||||||||||| || |||||||| ||||||||||| ||||||||||| |||||||| | Sbjct 874061 AGGAATCCCTCCTGATCAGCAACGTCTTATCTTCGCTGGAAAACAGCTTGAAGATGGCCG 874002 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || | ||| || ||| |||| ||||| || || || || |||| Sbjct 874001 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCA-CTTG 873956 Score = 91.5 bits (100), Expect = 4e-13 Identities = 85/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 |||||||||||| || |||||||| ||||||||||| ||||||||||| |||||||| | Sbjct 874550 AGGAATCCCTCCCGATCAGCAACGTCTTATCTTCGCTGGAAAACAGCTTGAAGATGGCCG 874491 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || | ||| || ||| |||| ||||| || || || || |||| Sbjct 874490 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCA-CTTG 874445 Score = 91.5 bits (100), Expect = 4e-13 Identities = 85/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||||||||||||||| |||||||| ||||||||||| || |||||||| |||||||| | Sbjct 878286 AGGAATCCCTCCGGATCAGCAACGTCTTATCTTCGCTGGTAAACAGCTTGAAGATGGCCG 878227 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || | ||| || ||| |||| ||||| || || || || |||| Sbjct 878226 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCA-CTTG 878181 Score = 86.0 bits (94), Expect = 2e-11 Identities = 84/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 |||||||||||| || |||||||| |||||||| || ||||||||||| |||||||| | Sbjct 873078 AGGAATCCCTCCCGATCAGCAACGTCTTATCTTTGCTGGAAAACAGCTTGAAGATGGCCG 873019 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || | ||| || ||| |||| ||||| || || || || |||| Sbjct 873018 CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCA-CTTG 872973 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| | || ||||| || |||||||| ||||| || |||||| Sbjct 878674 CAGATTTTCGTGAAAACCTTGACTGGAAAGACCATCACCCTAGAGGTTGAGGCATCAGAC 878615 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||| || || || |||||| || ||||||||||| Sbjct 878614 TCCATCGACAATGTTAAGTCAAAGATCCAAGACAAAGAAGG 878574 >seq737 Length=1614662 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||||| || || ||||| |||||||| ||||| ||| ||| || Sbjct 6115 CAAATCTTTGTCAAGACTCTTACCGGTAAAACTATCACCCTTGAGGTAGAAGCCTCTGAT 6056 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 | || || || ||||| |||||||| |||||||||||||| Sbjct 6055 AGTATTGACAATGTCAAGCAAAAGATCCAGGACAAAGAAGG 6015 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||||| || || ||||| |||||||| ||||| ||| ||| || Sbjct 31729 CAAATCTTTGTCAAGACTCTTACCGGTAAAACTATCACCCTTGAGGTAGAAGCCTCTGAT 31670 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 | || || || ||||| |||||||| |||||||||||||| Sbjct 31669 AGTATTGACAATGTCAAGCAAAAGATCCAGGACAAAGAAGG 31629 >seq185 Length=2393798 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||||| || || ||||| |||||||| ||||| ||| ||| || Sbjct 409526 CAAATCTTTGTCAAGACTCTTACCGGTAAAACTATCACCCTTGAGGTAGAAGCCTCTGAT 409467 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 | || || || ||||| |||||||| |||||||||||||| Sbjct 409466 AGTATTGACAATGTCAAGCAAAAGATCCAGGACAAAGAAGG 409426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203206685790746