Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq1034 147 2e-30 >seq1034 Length=671361 Score = 147 bits (162), Expect = 2e-30 Identities = 302/449 (67%), Gaps = 0/449 (0%) Strand=Plus/Plus Query 18870 CAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGA 18929 |||||| | || ||| || ||| || || || | ||||| | ||||| || || Sbjct 244268 CAAGGAGTTGACCAGTTGAAAAATGCCATTGAAAAGATTAAGAACAACCCTGACGATCGT 244327 Query 18930 CGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGT 18989 || || ||||| || | ||||||||| || | | |||| || ||||| ||| Sbjct 244328 CGCATCATTATTTCTGCCTGGAATCCATGTGACCTAGACAAGATGGCGCTGCCTCCCTGT 244387 Query 18990 CACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGA 19049 ||| | || |||||| || || |||| ||| | |||| || | |||||| || Sbjct 244388 CACGCTTTCATTCAGTTCTATGTCTGTGACGGAGAACTCTCCTCTCAGCTCTACCAGCGA 244447 Query 19050 TCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTAC 19109 || || ||||| || ||||| || ||||||||||| || | ||| | ||||| || ||| Sbjct 244448 TCAGGCGATATCGGTCTTGGAGTGCCGTTCAACATCGCAAGTTATTCGCTTCTGACTTAC 244507 Query 19110 ATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCA 19169 || |||| || || |||||||| ||| | || ||||| |||| ||| |||| || ||| Sbjct 244508 ATGATAGCCCACGTAACAGGACTCAAACCTGGTGATTTCGTTCACACACTGGGAGACGCA 244567 Query 19170 CATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCTAGCTCGATCCCCAAAACCT 19229 ||| | ||| ||||||| || || | | ||| | ||||| || || |||| Sbjct 244568 CATGTCTACGTGAATCACATTGAACCACTGAAAATTCAGCTCCAGAGAAAACCTCGACCT 244627 Query 19230 TTTCCTTGCCTTAAAATTATTCGAAATGTAACAGATATAAACGACTTTAAATGGGACGAT 19289 || || || || | || | || | || || |||| ||||||| || ||| Sbjct 244628 TTCCCAAAGCTCTTGATCAAACGTGAGGTGAAGGACATTGACGATTTTAAATTTGAAGAT 244687 Query 19290 TTTCAGCTTGATGGATATAATCCACACCC 19318 ||| || ||| ||| || ||||| || || Sbjct 244688 TTTGAGATTGTTGGGTACAATCCTCATCC 244716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399466708673655