Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1034 132 3e-26 >seq1034 Length=671361 Score = 132 bits (146), Expect = 3e-26 Identities = 249/366 (68%), Gaps = 0/366 (0%) Strand=Plus/Minus Query 101643 TTGGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACAT 101702 |||| || |||| ||| ||| | | ||| ||||| || | |||||||||| || | Sbjct 244634 TTGGGAAAGGTCGAGGTTTTCTCTGGAGCTGAATTTTCAGTGGTTCAATGTGATTCACGT 244575 Query 101703 AGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAG 101762 ||| || || ||||| | || || | || || ||||| || || || || | Sbjct 244574 AGACATGTGCGTCTCCCAGTGTGTGAACGAAATCACCAGGTTTGAGTCCTGTTACGTGGG 244515 Query 101763 CAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATAT 101822 | |||||| |||| | ||| ||||| || || ||||| || |||||||| | || |||| Sbjct 244514 CTATCATGTAAGTCAGAAGCGAATAACTTGCGATGTTGAACGGCACTCCAAGACCGATAT 244455 Query 101823 CAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTA 101882 | |||||| || || || ||| |||| || | ||| ||||||||||| || ||| | | Sbjct 244454 CGCCTGATCGCTGGTAGAGCTGAGAGGAGAGTTCTCCGTCACAGACATAGAACTGAATGA 244395 Query 101883 ATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTA 101942 | | ||||| || |||| | |||| || | ||| | |||||| ||| | || | Sbjct 244394 AAGCGTGACAGGGAGGCAGCGCCATCTTGTCTAGGTCACATGGATTCCAGGCAGAAATAA 244335 Query 101943 ACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAA 102002 || | | ||| |||||| | || || | ||||| | ||| || ||||||| Sbjct 244334 TGATGCGACGATCGTCAGGGTTGTTCTTAATCTTTTCAATGGCATTTTTCAACTGGTCAA 244275 Query 102003 CTCCTT 102008 |||||| Sbjct 244274 CTCCTT 244269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361217479345409