Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1521 113 5e-20 seq2869 104 3e-17 >seq1521 Length=375746 Score = 113 bits (124), Expect = 5e-20 Identities = 162/226 (72%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||||||||| | || || || || || || ||||| | || ||||| | Sbjct 339855 CCTCATCTCTACTAATCAGCTCATTACTGAAGGTAAGCCCTGGCATGATTCCTCGCTTCT 339796 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || |||| ||||| |||| ||||| || || || ||||| ||||||| Sbjct 339795 TCAGCCAGAAGATGGCAGCAAAGCTTCCACTGAAGAAGATACCCTCCACTGCAGCAAAGG 339736 Query 24277 CAATAAGTCTTTCTCCATAACCGGC--GCT-GTCATGTATCCACTTTTGAGCCCAATCGG 24333 | | | ||| |||||| | | || || |||| |||||||| ||||| || | Sbjct 339735 CCACTACTCTCTCTCCAAAGTCAGCTTCCTGGTCACCGATCCACTTAATGGCCCAGTCTG 339676 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 24379 |||||||||| ||||| |||| ||||| || ||||| ||||| || Sbjct 339675 CCTTCTTTTTGACACATGGCAAGGTCTCAATGGCATTGAAGAGGTA 339630 >seq2869 Length=866877 Score = 104 bits (114), Expect = 3e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 53382 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 53441 ||||| || || || || || || ||| || || | |||||| || |||||||| | Sbjct 628693 ATCCTTGGTAGGTTTCATAAGGCCCATCCCGTTCTGCCAATTCACAGCTTGCCTCTAAAG 628752 Query 53442 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTA-GATCTTGTGCTTCCAGGCTATCA 53500 | | || |||||||| || ||||| | || |||| || || |||| ||| || ||| Sbjct 628753 CTGCATAGTAAATGGTCTCAAAGATTTGTTTGTTTAAGAGCT-GTGCCTCCTCACTTTCA 628811 Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 |||||||| | | || || || ||||| || | || || ||||| || || || ||| Sbjct 628812 AATGGATACCTCATCAGGATGAAGGCGTCCGCCAGACCCTGTACACCTATTCCAATTGGT 628871 Query 53561 CTATGTCTCTTATTAGAGATTTCAGC 53586 ||||||||| ||||||| | ||||| Sbjct 628872 CTATGTCTCATATTAGACCTCTCAGC 628897 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| || ||||||||||| || || || || ||||| | ||||| || | Sbjct 636252 CACTGAAAACTTTCTTGGTTTCTTTGTGGAGGTTGGAGACAGCTATGCGGGCGGCGAGGA 636311 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | || || || || || |||| || | |||| |||||| Sbjct 636312 TGGCATAGTCGGGGTGCTTGGTCGTCATGGTAGCAGCCGTTTCAGCGGCCAGATTGTCCA 636371 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCA 54932 ||| ||||| || ||||| || | ||| | ||| ||||||| Sbjct 636372 GTTCCACCGTGGTCACTCCTGGGTACAGTCCATTGATCACCTTCA 636416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593664758578320