Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq5973 100 3e-16 seq1034 96.9 4e-15 >seq5973 Length=2275 Score = 100 bits (110), Expect = 3e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 146019 GTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGAC 146078 ||||||||| | ||| |||| | ||||| || || | ||||||||| || || || Sbjct 1713 GTAATCTGTGTGCATGTCTTTGTACTCTGCCCCAAAATGGCGCCACTGGAAACCATAAAC 1654 Query 146079 GGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGA 146138 || |||||||| || ||| | ||| ||| ||| | |||||||||||||| Sbjct 1653 TGGACCCAGGTCGCCCTCCTCTCGGTGGTTCAGGCCGAGGTTATCAAGGAAGTCCCGGGA 1594 Query 146139 CCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCC 146198 ||| |||||||||||||| | ||| || || || || | ||| | || | || Sbjct 1593 CCCATTGGCGTCCCAGATGTGGACACCTTTCTCGCTCAGTTTCTTGCCATTGGTACAGCC 1534 Query 146199 CCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAG 146258 | || ||||| |||||||| || || |||| |||||| || | ||| |||||||| Sbjct 1533 CTGGACAAACCACAGCAGCTCCTCAGCTACGCCCCGCCAGAAAACTCGCTTTGTGGTCAG 1474 >seq1034 Length=671361 Score = 96.9 bits (106), Expect = 4e-15 Identities = 168/244 (69%), Gaps = 8/244 (3%) Strand=Plus/Minus Query 146019 GTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGAC 146078 ||||||||| | ||| |||| | ||||| || || | ||||||||| || || || Sbjct 243848 GTAATCTGTGTGCATGTCTTTGTACTCTGCCCCAAAATGGCGCCACTGGAAACCATAAAC 243789 Query 146079 GGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGG----CGAGGAAGTCCC 146134 || |||||||| || ||| | || ||| |||| || | ||||| |||| Sbjct 243788 TGGACCCAGGTCGCCCTCCTCTCGATGGTTCAG----GCCCAGGTTATCCAGGAATTCCC 243733 Query 146135 GGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGG 146194 | |||||||||||||||||||| | ||| || || || || | ||| | || Sbjct 243732 GCGACCCGTTGGCGTCCCAGATGTGGACCCCTTTCTCGCTCAGTTTCTTGCCATTGGTAC 243673 Query 146195 ACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGG 146254 | ||| || ||||| ||||||||||| || |||| |||||| || | ||| |||| Sbjct 243672 AGCCCTGGACAAACCATAGCAGCTCTTCAGCTACGCCCCGCCAGAAAACTCGCTTTGTGG 243613 Query 146255 TCAG 146258 |||| Sbjct 243612 TCAG 243609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590020307522360