Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq1034 132 3e-26 >seq1034 Length=671361 Score = 132 bits (146), Expect = 3e-26 Identities = 190/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 97007 TTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACAT 97066 |||||||||| | || ||| | ||||| | | || | |||||||||||||| | Sbjct 244634 TTGGGAAAGGTCGAGGTTTTCTCTGGAGCTGAATTTTCAGTGGTTCAATGTGATTCACGT 244575 Query 97067 AAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGG 97126 | | || || ||||| | ||||||| || || ||||| | | || || |||| Sbjct 244574 AGACATGTGCGTCTCCCAGTGTGTGAACGAAATCACCAGGTTTGAGTCCTGTTACGTGGG 244515 Query 97127 CGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATAT 97186 | ||||| |||| | || ||||| || || ||||| || ||||| || || || |||| Sbjct 244514 CTATCATGTAAGTCAGAAGCGAATAACTTGCGATGTTGAACGGCACTCCAAGACCGATAT 244455 Query 97187 CAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCA 97246 | |||||| || || | |||| |||| || | ||| ||||| ||||| |||||| | | Sbjct 244454 CGCCTGATCGCTGGTAGAGCTGAGAGGAGAGTTCTCCGTCACAGACATAGAACTGAATGA 244395 Query 97247 ATACATGACAGGGGGGCAACGCCATTTT 97274 | | |||||||| |||| |||||| || Sbjct 244394 AAGCGTGACAGGGAGGCAGCGCCATCTT 244367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346751629772630