Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1383 118 1e-21 seq2781 114 1e-20 seq1601 114 1e-20 seq1208 109 6e-19 seq376 109 6e-19 seq1986 107 2e-18 seq1799 107 2e-18 seq1493 98.7 1e-15 >seq1383 Length=1214666 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| | |||||| |||||||| | ||| ||||| ||||| ||||| |||| Sbjct 711704 TCCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGA 711763 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| || | || |||||||| ||||| ||||| || | || |||||| || | || Sbjct 711764 GAGAGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGG 711823 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || |||||| ||| || |||| | | | ||||| | ||||| Sbjct 711824 AATTCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCAC 711883 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||||||||| || || || || |||||||||||||| Sbjct 711884 TTCCAGTGTGATGGTTTTGCCAGTCAGTGTTTTGACAAAGATTTGCAT 711931 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| | |||||| |||||||| | ||| ||||| ||||| ||||| |||| Sbjct 711027 TCCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGA 711086 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || ||||| ||||| ||||| || | || |||||| || | || Sbjct 711087 GAGTGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGG 711146 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || |||||| ||| || ||||| | | | ||||| | ||||| Sbjct 711147 AATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCTGAGGGCTCCAC 711206 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||||||||| || || || || |||||||||||||| Sbjct 711207 TTCCAGTGTGATGGTTTTGCCAGTCAGTGTTTTGACAAAGATTTGCAT 711254 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | |||||| |||||||| | ||| || || ||||| ||||| || | Sbjct 711256 CCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCGGAG 711315 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || ||||| ||||| ||||| || | || |||||| || | || Sbjct 711316 AGAGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGA 711375 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | || |||||| ||| || |||| | | | ||||| | ||||| Sbjct 711376 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACT 711435 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||||||||| || ||||| || |||||||||||||| Sbjct 711436 TCCAGTGTGATGGTTTTGCCAGTCAGCGTTTTGACAAAGATTTGCAT 711482 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | |||||| |||||||| | ||| ||||| ||||| ||||| |||| Sbjct 711484 CCTCCTCTCAGACGCAAGACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAG 711543 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || ||||| ||||| ||||| || | || |||||| || | || Sbjct 711544 AGAGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGA 711603 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | || |||||| ||| || |||| | | | ||||| | ||||| Sbjct 711604 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCCACT 711663 Query 43137 TCGACCGTGATGGTTTTGCCCGT 43159 || | |||||||||||||| || Sbjct 711664 TCCAGTGTGATGGTTTTGCCAGT 711686 >seq2781 Length=651635 Score = 114 bits (126), Expect = 1e-20 Identities = 76/84 (90%), Gaps = 3/84 (4%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTC---GGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 |||||| |||||||| ||| ||||||||||||| ||||||||||||||||||||| | Sbjct 32431 AAAAATGTTCTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 32490 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||||| Sbjct 32491 TACTCACCACTATACTACCGAGGA 32514 Score = 105 bits (116), Expect = 8e-18 Identities = 76/87 (87%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTC---GGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 || |||||| | |||||| ||| ||||||||||||| ||||||||||||||||||||| Sbjct 29964 ATAAAAAATGTACTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 30023 Query 60111 ACATACTCACCACTATACTACCGAGGA 60137 ||||| ||||||||||||||||||| Sbjct 30024 GGATACTTACCACTATACTACCGAGGA 30050 Score = 105 bits (116), Expect = 8e-18 Identities = 74/84 (88%), Gaps = 3/84 (4%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTC---GGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 |||||| | |||||| ||| ||||||||||||| ||||||||||||||||||||| | Sbjct 56427 AAAAATGTACTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 56486 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||| ||||||||||||||||||| Sbjct 56487 TACTTACCACTATACTACCGAGGA 56510 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 38953 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 39012 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 39013 TACTACCGAGGA 39024 >seq1601 Length=420593 Score = 114 bits (126), Expect = 1e-20 Identities = 80/91 (88%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| ||| |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 123178 AAACATTGCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 123119 Query 60117 TCACCACTATACTACCGAGGATTGAATATAT 60147 | |||||||||||||||||||||| ||| || Sbjct 123118 TTACCACTATACTACCGAGGATTGCATAGAT 123088 >seq1208 Length=446669 Score = 109 bits (120), Expect = 6e-19 Identities = 74/83 (89%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 364673 TTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 364614 Query 60122 ACTATACTACCGAGGATTGAATA 60144 |||||||||||||||| || ||| Sbjct 364613 ACTATACTACCGAGGAGTGGATA 364591 >seq376 Length=676522 Score = 109 bits (120), Expect = 6e-19 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 173873 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 173814 Query 60126 TACTACCGAGGATTGAAT 60143 ||||||||||||||| || Sbjct 173813 TACTACCGAGGATTGCAT 173796 >seq1986 Length=802826 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 232596 TTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 232655 Query 60124 TATACTACCGAGGA 60137 |||||||||||||| Sbjct 232656 TATACTACCGAGGA 232669 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 234070 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 234129 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 234130 TACTACCGAGGA 234141 >seq1799 Length=180028 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 103213 TTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 103154 Query 60124 TATACTACCGAGGA 60137 |||||||||||||| Sbjct 103153 TATACTACCGAGGA 103140 >seq1493 Length=1088289 Score = 98.7 bits (108), Expect = 1e-15 Identities = 70/79 (89%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||||| | ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 675064 AAAAATTTGCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 675005 Query 60116 CTCACCACTATACTACCGA 60134 || ||||||||||||| || Sbjct 675004 CTTACCACTATACTACTGA 674986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571762855612520