Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1383 93.3 6e-14 >seq1383 Length=1214666 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| || | || |||||||| | || ||||| || || || || || | Sbjct 711703 TTCCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAG 711762 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||||| | || ||| |||| ||||| || || || |||||||| |||||||| || | Sbjct 711763 AGAGAGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGG 711822 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||||||||| || || Sbjct 711823 GAATTCCTTCTTTGTCCTG 711841 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| || | || |||||||| | || ||||| || || || || || || Sbjct 711933 CCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAG 711992 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || ||| || || ||||| || || || |||||||| |||||||| || ||| Sbjct 711993 AGAGTGCGGCCATCTTCCAACTGTTTCCCGGCGAAGATCAATCTCTGCTGATCTGGGGGA 712052 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| || || Sbjct 712053 ATTCCTTCTTTGTCCTG 712069 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| || | || |||||||| | || |||||||| || || || || || Sbjct 711256 CCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCGGAG 711315 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | ||||| || || || |||||||| |||||||| || ||| Sbjct 711316 AGAGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGA 711375 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| || || Sbjct 711376 ATTCCTTCTTTGTCCTG 711392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743455216641280