Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1383 102 6e-17 >seq1383 Length=1214666 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| || || || ||||| || |||||||||||||| | | ||| || ||||||| Sbjct 711046 ACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGTGTGCGACCATCTTCC 711105 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | ||||| || || |||| | ||| || ||||| ||| | ||||| || || Sbjct 711106 AGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGG 711165 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 || | | || ||||| | | ||| ||||| |||||| ||| | |||||| |||| Sbjct 711166 ATCT-TGGCTTTGACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTT 711224 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| |||| |||||| ||||| |||||||| Sbjct 711225 GCCAGTCAGTGTTTTGACAAAGATTTGCAT 711254 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| || || || |||||||| |||||||||||||||| | || || ||||||| Sbjct 711274 ACCAAATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCTTCC 711333 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | ||||| || || |||| | ||| || ||||| ||| | ||||| || || Sbjct 711334 AGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGG 711393 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | | ||| ||||| |||||| ||| | |||||| ||||| Sbjct 711394 ATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTG 711453 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||| ||||| ||||| |||||||| Sbjct 711454 CCAGTCAGCGTTTTGACAAAGATTTGCAT 711482 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| || || || ||||| || |||||||||||||| | | || | |||||| Sbjct 711723 ACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCT 711782 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | ||||| || || |||| | ||| || ||||| ||| | ||||| || || Sbjct 711783 AGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGG 711842 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | | ||| ||||| |||||| ||| | |||||| ||||| Sbjct 711843 ATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTG 711902 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||| |||||| ||||| |||||||| Sbjct 711903 CCAGTCAGTGTTTTGACAAAGATTTGCAT 711931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379308590489955