Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2869 116 3e-21 seq1383 82.4 7e-11 >seq2869 Length=866877 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 ||||||| || || || ||||| | ||||||||||| || || || | | |||||| | Sbjct 630633 TCATAAAGAGGTCAGGGATCCACATGGCGTAGAACAGATCCCGAGCTCTCTGCTCCTCCT 630692 Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471 |||| |||||||| || | || | ||| || ||||| |||||||||||||| |||| Sbjct 630693 TGCCAGTGTTCTTCTTACAGTCGAGAAACATGAAAACGTCTGCATGCCACGGCTCCAGGT 630752 Query 23472 AAACGGCAAACGCGCCCGGTCTCT 23495 ||| ||||||||| || ||||||| Sbjct 630753 AAATGGCAAACGCACCTGGTCTCT 630776 Score = 89.7 bits (98), Expect = 5e-13 Identities = 117/161 (73%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 22171 CAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTC 22230 || ||| || ||||| || || || || || |||| |||||||||| ||||| | Sbjct 626098 CATACCAAT-TTCCAGGCATAGAAGTGCATGCTGGTCAGTTTTCCATAATTCGGCTCTGC 626156 Query 22231 CATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATT 22290 |||| | || | |||||||||||| || || || |||||||| ||||| ||||| || Sbjct 626157 AATGTGAATGTTTAGCGACTGACTCTGGTCTATGAATGCTCCTCGGTCGGCAGCCATCTT 626216 Query 22291 TATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACA 22331 || || ||| | || || ||||| || |||||||||| Sbjct 626217 TAGCACTGTCTTCTGGGATATCTCCCACACAGTCTTGTACA 626257 Score = 86.0 bits (94), Expect = 6e-12 Identities = 116/160 (73%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACG--TGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATC 23104 |||||| ||| |||| |||| ||||| || || ||||| || ||||||||||| || Sbjct 630106 CACCTCATCT--GGACTGCTGTATTCTACGATCTCTGTACACAGGTTGCTACACTTGATA 630163 Query 23105 GTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGC 23164 || |||| || ||||||| || | || || ||| ||||| | ||||||||| Sbjct 630164 GTTCCCAGGTTTTGCTGGTTGGACTTCCTGTTACAGTGATCTTTGTACAACATGTACGGT 630223 Query 23165 GTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 || |||||||| ||||| ||| ||||| || ||||| Sbjct 630224 GTCCCCGTCTCTGTCTGCGCCTCAATGATGGCGTACCACA 630263 >seq1383 Length=1214666 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || ||||| || || ||||| || || || | || || || || Sbjct 712163 AATCATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATTACACTTGAAGTAGAGCC 712104 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| | |||| ||||| | || |||||| ||||| | || || || Sbjct 712103 CTCGGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGA 712044 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||| | | || ||||| || |||||||||||||| ||| | || || Sbjct 712043 TCAGCAGAGATTGATCTTCGCCGGGAAACAGTTGGAAGATGGCCGCACTCTCTCTGACTA 711984 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || ||||| || || ||| |||| | | ||||| || |||| Sbjct 711983 CAACATTCAGAAGGAATCCACCCTCCATTTGGTCTTGCGTCTGAGAGGAGGTA 711931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445723723439280