Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1521 98.7 2e-15 seq1034 84.2 4e-11 >seq1521 Length=375746 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 102095 CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 ||||| | |||||| || |||||| || ||| |||||| ||||||||||||||| Sbjct 340166 CCATCCAAAGAAAGAATATATGAAATCATCTGTGATGCCGTCAAGATTGAACAAGAATTT 340225 Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214 || || | | |||||| ||| | | || ||||||||||| |||||| |||||| Sbjct 340226 CTGACGGAAGCTCTGCCTTGTAACCTCATAGGGATGAACTGCAAACTGATGAAACAGTAC 340285 Query 102215 ATTGAATTTGTGGCAGATAAACTA 102238 ||||||||||| || || | |||| Sbjct 340286 ATTGAATTTGTTGCTGACAGACTA 340309 >seq1034 Length=671361 Score = 84.2 bits (92), Expect = 4e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 35223 TTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGT 35282 ||||| | || || || ||| | |||||||| | || || | ||||| || |||| Sbjct 243601 TTCCATTACTGACCACAAAGCGAGTTTTCTGGCGGGGCGTAGCTGAAGAGCTGCTATGGT 243660 Query 35283 TCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGAACG 35342 | || |||| ||| | | ||| || || | |||| | | ||||||||| ||| Sbjct 243661 TTGTCCAGGGCTGTACCAATGGCAAGAAACTGAGCGAGAAAGGGGTCCACATCTGGGACG 243720 Query 35343 CTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATT 35402 | || |||||||||||||| |||| | || | || || ||| ||||| || Sbjct 243721 CCAACGGGTCGCGGGAATTCCTGGATAACCTGGGCCTGAACCATCGAGAGGAGGGCGACC 243780 Query 35403 TGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATA 35448 |||| || || || || ||||| ||||| |||||||| || || || Sbjct 243781 TGGGTCCAGTTTATGGTTTCCAGTGGCGCCATTTTGGGGCAGAGTA 243826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989486891194345