Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1521 127 3e-24 seq2869 113 6e-20 >seq1521 Length=375746 Score = 127 bits (140), Expect = 3e-24 Identities = 165/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||||||||| | || ||| || || || || ||||| | || ||||| | Sbjct 339855 CCTCATCTCTACTAATCAGCTCATTACTGAAGGTAAGCCCTGGCATGATTCCTCGCTTCT 339796 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| ||| || ||| |||||||| || || ||||||||||||| Sbjct 339795 TCAGCCAGAAGATGGCAGCAAAGCTTCCACTGAAGAAGATACCCTCCACTGCAGCAAAGG 339736 Query 33724 CAATAAGTCTCTCTCCATAACCGGC--GCT-GTCATGTATCCACTTTTGAGCCCAATCGG 33780 | | | |||||||||| | | || || |||| |||||||| ||||| || | Sbjct 339735 CCACTACTCTCTCTCCAAAGTCAGCTTCCTGGTCACCGATCCACTTAATGGCCCAGTCTG 339676 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33826 |||||||||| ||||| |||| || || |||||||| ||||| || Sbjct 339675 CCTTCTTTTTGACACATGGCAAGGTCTCAATGGCATTGAAGAGGTA 339630 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||| || |||||||| |||||||| || ||||| ||||| || ||||| || |||||||| Sbjct 340558 CATGACGCCCATTTTCTGGTATTCCCCGACACGCTTTTCAAAGAAATTTGTCTTTCCTTC 340499 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAA 33384 ||| ||||| | |||||| || ||||| || || |||||||||| Sbjct 340498 CAAGGATATGTGTTCCATAAAGTCAAAAGGGTTCTCGACATTGTAAA 340452 >seq2869 Length=866877 Score = 113 bits (124), Expect = 6e-20 Identities = 150/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 62620 ATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATG 62679 ||||| || || ||||| || || ||| || || | || ||| || |||||||| | Sbjct 628693 ATCCTTGGTAGGTTTCATAAGGCCCATCCCGTTCTGCCAATTCACAGCTTGCCTCTAAAG 628752 Query 62680 CACCGTAATAAATGGTTTCAAAGATCTTCTTATTTA-GATCTTGTGCTTCCGGGCTATCA 62738 | | || |||||||| |||||||| | || |||| || || |||| ||| || ||| Sbjct 628753 CTGCATAGTAAATGGTCTCAAAGATTTGTTTGTTTAAGAGCT-GTGCCTCCTCACTTTCA 628811 Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798 |||||||| | | || || || |||||||| | || || ||||| || || || ||| Sbjct 628812 AATGGATACCTCATCAGGATGAAGGCGTCCGCCAGACCCTGTACACCTATTCCAATTGGT 628871 Query 62799 CTATGTCTCTTATTAGAGATTTCAGC 62824 ||||||||| ||||||| | ||||| Sbjct 628872 CTATGTCTCATATTAGACCTCTCAGC 628897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629757302837520