Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq5973 86.0 5e-12 >seq5973 Length=2275 Score = 86.0 bits (94), Expect = 5e-12 Identities = 172/251 (69%), Gaps = 8/251 (3%) Strand=Plus/Minus Query 21280 TGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCG- 21338 ||||||| ||||||||||| | ||||||||| || || || || ||||| |||||||| Sbjct 1693 TGTACTCTGCCCCAAAATGGCGCCACTGGAAACCATAAACTGGACCCAGGTCGCCCTCCT 1634 Query 21339 --CGGCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAA 21396 ||| ||| | | ||| | | | ||| | |||||||| | |||||||| | Sbjct 1633 CTCGGTGGTTC---AGGCCGAGGTTATCAAGGAAGTCCCGGGACCCATTGGCGTCCCAGA 1577 Query 21397 TTTTTACGCCGCGG-CGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGC 21455 | | || || ||| ||||| || | ||| ||||| || |||||||||| Sbjct 1576 TGTGGACACCTTTCTCGCT-CAGTTTCTTGCCATTGGTACAGCCCTGGACAAACCACAGC 1518 Query 21456 AACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCC 21515 | |||||| | ||||||| ||| || || | || ||||| | | ||||| |||| Sbjct 1517 AGCTCCTCAGCTACGCCCCGCCAGAAAACTCGCTTTGTGGTCAGTAATGGAAATGAGTCC 1458 Query 21516 CTGAGGTTATA 21526 || | |||||| Sbjct 1457 CTTAAGTTATA 1447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427736069650320