Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2869 122 1e-22 seq1521 122 1e-22 >seq2869 Length=866877 Score = 122 bits (134), Expect = 1e-22 Identities = 152/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 79292 ATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATG 79351 ||||| ||| ||||||||||| || ||| ||| || |||||||| || |||||||| | Sbjct 628693 ATCCTTGGTAGGTTTCATAAGGCCCATCCCGTTCTGCCAATTCACAGCTTGCCTCTAAAG 628752 Query 79352 CTCCGTAATAAATGGTTTCGAAAATCT-TCTTATTGAGATCTTGTGCTTCTAGGCTATCA 79410 || | || |||||||| || || || | | | || ||| | ||||| || || ||| Sbjct 628753 CTGCATAGTAAATGGTCTCAAAGATTTGTTTGTTTAAGAGC-TGTGCCTCCTCACTTTCA 628811 Query 79411 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 79470 |||||||| | | || || || ||||| || | || || ||||| || || || ||| Sbjct 628812 AATGGATACCTCATCAGGATGAAGGCGTCCGCCAGACCCTGTACACCTATTCCAATTGGT 628871 Query 79471 CTATGTCTCTTATTAGAAATTTCAGC 79496 ||||||||| ||||||| | ||||| Sbjct 628872 CTATGTCTCATATTAGACCTCTCAGC 628897 >seq1521 Length=375746 Score = 122 bits (134), Expect = 1e-22 Identities = 164/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||||||||| || || || || || || || ||||| | || ||||| | Sbjct 339855 CCTCATCTCTACTAATCAGCTCATTACTGAAGGTAAGCCCTGGCATGATTCCTCGCTTCT 339796 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| ||||| ||| |||||||| || || ||||| ||||||| Sbjct 339795 TCAGCCAGAAGATGGCAGCAAAGCTTCCACTGAAGAAGATACCCTCCACTGCAGCAAAGG 339736 Query 50102 CAACAAGTCTCTCTCCATAACTGGC--GCT-GTCATGTATCCACTTTTGAGCCCAATCGG 50158 | || | |||||||||| | || || |||| |||||||| ||||| || | Sbjct 339735 CCACTACTCTCTCTCCAAAGTCAGCTTCCTGGTCACCGATCCACTTAATGGCCCAGTCTG 339676 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204 |||||||||| ||||| |||| || || |||||||| ||||| || Sbjct 339675 CCTTCTTTTTGACACATGGCAAGGTCTCAATGGCATTGAAGAGGTA 339630 Score = 107 bits (118), Expect = 3e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 50344 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 50403 ||||||||||| || ||||| |||||||| |||||||| || | ||||| || || Sbjct 339020 AAATTTTCATTGACGATTCCATCACTGGCAGCAAAAAAAGCAAGAACATGGGAAATGAAG 338961 Query 50404 TGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCT 50463 |||| ||| | | | || | ||| | | | |||||| || | ||| || || Sbjct 338960 TGTTGTTCCTCGTCCTTCAGAGCTTCCCAGTGACCCAGATCTTTGGAGAGATCGACCTCC 338901 Query 50464 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGG 50523 || | ||||| ||||| || || ||||| || ||||| | |||||||||||| || ||| Sbjct 338900 TCAGCAGTCCAGAATGAGGCTTCAGCCTTCTTGTACATTTGCCAGATGTCATGGTACTGG 338841 Query 50524 ATTGGGAAAATAACAAA 50540 |||||||| | ||||| Sbjct 338840 ATTGGGAAGACTACAAA 338824 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 ||| || |||||||| |||||||| || ||||| ||||| || ||||| || |||||||| Sbjct 340558 CATGACGCCCATTTTCTGGTATTCCCCGACACGCTTTTCAAAGAAATTTGTCTTTCCTTC 340499 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAA 49762 ||| ||||| | |||||| || ||||| || || ||||| |||| Sbjct 340498 CAAGGATATGTGTTCCATAAAGTCAAAAGGGTTCTCGACATTGTAAA 340452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718200034740760