Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1521 93.3 4e-14 >seq1521 Length=375746 Score = 93.3 bits (102), Expect = 4e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 ||||| |||||||| |||||||| |||||||| ||||| |||||||||||||| ||||| Sbjct 339325 ATGTAGGTATCAATGAGTAAGCTGTACATTTCGGAGTGGATGTTTTCCATAGCAATCTGG 339266 Query 14202 AAACCATAAAAGCATC 14217 || ||||| || |||| Sbjct 339265 AATCCATAGAAACATC 339250 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||||||||| || || || || || | |||||||| | |||||| || | Sbjct 339855 CCTCATCTCTACTAATCAGCTCATTACTGAAGGTAAGCCCTGGCATGATTCCTCGCTTCT 339796 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| || || |||||||| || ||||| || ||||| ||||||||||| | Sbjct 339795 TCAGCCAGAAGATGGCAGCAAAGCTTCCACTGAAGAAGATACCCTCCACTGCAGCAAAGG 339736 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | | || || |||||||| |||| | || ||||| || | ||||| || | Sbjct 339735 CCACTACTCTCTCTCCAAAGTCAGCTTCCTGGTCACCGATCCACTTAATGGCCCAGTCTG 339676 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113 || ||||| | | | || || ||||| ||||| || Sbjct 339675 CCTTCTTTTTGACACATGGCAAGGTCTCAATGGCATTGAA 339636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479682072040600